View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0372_high_3 (Length: 321)
Name: NF0372_high_3
Description: NF0372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0372_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 30 - 304
Target Start/End: Original strand, 29711828 - 29712103
Alignment:
| Q |
30 |
cctttatattccggaagaaagaaactgatttttaatattaatgaagtaagtttttgtttccttatgacttgaataaggattcacgattataagaattaaa |
129 |
Q |
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| T |
29711828 |
cctttatatttcggaagtaagaaactggtttttaatgttgatgaagtaagtttttgtttccttatgacttgaataaggattcacgattataagaattaaa |
29711927 |
T |
|
| Q |
130 |
ttttgatttaatatttctgcgtgtatgaagcatgacatattggtctcatgtatgtataggcgtattttccaattttggaaagtgggtccaccacatattt |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |
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| T |
29711928 |
ttttgatttaatatttctgcgtgtatgaagcatgacatattggtctcatgtatgtataggcgtattttctaatgttggaaagtgggtccaccacatattt |
29712027 |
T |
|
| Q |
230 |
gcaatttggattggacttgctgaatct-attnnnnnnngagcttgatcttgttccttcacaaatgtctgtgctcct |
304 |
Q |
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| T |
29712028 |
gcaatttggattggacttgctgaatctaataaaaaaaagagcttgatcttgttccttcacaaatgtgtgtgctcct |
29712103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 173; Significance: 5e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 30 - 291
Target Start/End: Complemental strand, 55803630 - 55803369
Alignment:
| Q |
30 |
cctttatattccggaagaaagaaactgatttttaatattaatgaagtaagtttttgtttccttatgacttgaataaggattcacgattataagaattaaa |
129 |
Q |
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| T |
55803630 |
cctttatatttcggaagtaagaaactggtttttaatgttgatgaagtaagtttttgtttccttatgacttgaataaggatttgcgattataagaattaaa |
55803531 |
T |
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| Q |
130 |
ttttgatttaatatttctgcgtgtatgaagcatgacatattggtctcatgtatgtataggcgtattttccaattttggaaagtgggtccaccacatattt |
229 |
Q |
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| T |
55803530 |
ttttggtttaatatttctgcgtgtatgaagcgtgacatattggtctcatgtatgtataggcgtattttctaatgttggaaattaggtccaccacatattt |
55803431 |
T |
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| Q |
230 |
gcaatttggattggacttgctgaatctattnnnnnnngagcttgatcttgttccttcacaaa |
291 |
Q |
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| T |
55803430 |
gcaatttggattggacttgctcgatctaataaaaaaagagcttggtcttgttccttcacaaa |
55803369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 51 - 291
Target Start/End: Complemental strand, 55808196 - 55807957
Alignment:
| Q |
51 |
aaactgatttttaatattaatgaagtaagtttttgtttccttatgacttgaataaggattcacgattataagaattaaattttgatttaatatttctgcg |
150 |
Q |
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| T |
55808196 |
aaactggtttttaatgttgatgaagtaagtttttgtttccttatgacttgaataagaatttg-gattataagaattaaattttggtttaatatttatgcg |
55808098 |
T |
|
| Q |
151 |
tgtatgaagcatgacatattggtctcatgtatgtataggcgtattttccaattttggaaagtgggtccaccacatatttgcaatttggattggacttgct |
250 |
Q |
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| T |
55808097 |
tgtataaagcatgacatattggtctcatgtatgtataggcgtattttctaatgttggaaagtgggtccaccacatatttgcaatttgaattggacttgct |
55807998 |
T |
|
| Q |
251 |
gaatctattnnnnnnngagcttgatcttgttccttcacaaa |
291 |
Q |
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| T |
55807997 |
ggatctaataaaaaaagagcttggtcttgttccttcacaaa |
55807957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 114; Significance: 8e-58; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 70 - 257
Target Start/End: Original strand, 15166556 - 15166740
Alignment:
| Q |
70 |
atgaagtaagtttttgtttccttatgacttgaataaggattcacgattataagaattaaattttgatttaatatttctgcgtgtatgaagcatgacatat |
169 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| | |||||||||||||||||| |
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| T |
15166556 |
atgaagtaagtttttgttaccttatgacttgaataaggattcacgattataagaattagattttggtttaatatttcgtcacgtatgaagcatgacatat |
15166655 |
T |
|
| Q |
170 |
tggtctcatgtatgtataggcgtattttccaattttggaaagtgggtccaccacatatttgcaatttggattggacttgctgaatcta |
257 |
Q |
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| T |
15166656 |
tggtctcatatatgtataggcgtattttctaattttgaaatatggat---ccacatatttgcaatttggaatggacttgctggatcta |
15166740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 70 - 257
Target Start/End: Original strand, 15170812 - 15170998
Alignment:
| Q |
70 |
atgaagtaagtttttgtttccttatgacttgaataaggattcacgattataagaattaaattttgatttaatatttctgcgtgtatgaagcatgacata- |
168 |
Q |
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||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
15170812 |
atgaagtaagtttttgtttccttatgatttgaacaaggattcacgattataagaattaaattttggtttaatatttctgcgtgtatgaagcatgacatat |
15170911 |
T |
|
| Q |
169 |
-ttggtctcatgtatgtataggcgtattttccaattttggaaagtgggtccaccacatatttgcaatttggattggacttgctgaatcta |
257 |
Q |
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||||||||||||||||| |||||||| | ||||| | || ||||| |||||||||||||||||||||||||||| ||| ||||| |
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| T |
15170912 |
tttggtctcatgtatgtacaggcgtatgatataatttcgaaatttgggt---ccacatatttgcaatttggattggacttactggatcta |
15170998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 71 - 257
Target Start/End: Complemental strand, 8517224 - 8517043
Alignment:
| Q |
71 |
tgaagtaagtttttgtttccttatgacttgaataaggattcacgattataagaattaaattttgatttaatatttctgcgtgtatgaagcatgacatatt |
170 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||||| |
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| T |
8517224 |
tgaagtaagtttttgtttccttatgacttgaataaggattcacgattataagaattaaattttggtttaatatttctgc--ctctgaagcatgacatatt |
8517127 |
T |
|
| Q |
171 |
ggtctcatgtatgtataggcgtattttccaattttggaaagtgggtccaccacatatttgcaatttggattggacttgctgaatcta |
257 |
Q |
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|||||||||||||||||||| | || || |||||| || ||||| ||||| |||||||||||||||||||||||||| ||||| |
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| T |
8517126 |
ggtctcatgtatgtataggccttttatctaatttttaaacatgggt---ccacacatttgcaatttggattggacttgctggatcta |
8517043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 71 - 257
Target Start/End: Complemental strand, 8490425 - 8490238
Alignment:
| Q |
71 |
tgaagtaagtttttgtttccttatgacttgaataagga----ttcacgattataagaattaaattttgatttaatatttctgcgtgtatgaagcatgaca |
166 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| | |||||||||||||| |
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| T |
8490425 |
tgaagtaagtttttgtttccttatgacttgaataaggaaggattcacgattataagaattaaattttggtttaatatttctgcctctatgaagcatgaca |
8490326 |
T |
|
| Q |
167 |
tattggtctcatgtatgtataggcgtattttccaattttggaaagtgggtccaccacatatttgcaatttggattggacttgctgaatcta |
257 |
Q |
| |
|
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| T |
8490325 |
tattggtctcatgtatgtataggccttttatctaatttttaaacatgggt---ccacacatttgcaatttggattggacttgctggatcta |
8490238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 70 - 257
Target Start/End: Original strand, 1525474 - 1525658
Alignment:
| Q |
70 |
atgaagtaagtttttgtttccttatgacttgaataaggattcacgattataagaattaaattttgatttaatatttctgcgtgtatgaagcatgacata- |
168 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||| |||| |||||| |||||||| ||| |
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| T |
1525474 |
atgaagtaagtttttgtttccttataacttgaataaggactcacgattataagaattaaattttggtttaata-ttctatgtgtataaagcatgatatat |
1525572 |
T |
|
| Q |
169 |
ttggtctcatgtatgtataggcgtattttccaattttggaaagtgggtccaccacatatttgcaatttggattggacttgctgaatcta |
257 |
Q |
| |
|
|||||||||||||||| |||| ||||| ||||||||||| | ||||| ||||| ||||||||||||||||||||||| || ||||| |
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|
| T |
1525573 |
ttggtctcatgtatgtttaggtgtattatccaattttggtatatgggt---ccacacatttgcaatttggattggacttgttggatcta |
1525658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 123 - 257
Target Start/End: Complemental strand, 8485374 - 8485243
Alignment:
| Q |
123 |
aattaaattttgatttaatatttctgcgtgtatgaagcatgacatattggtctcatgtatgtataggcgtattttccaattttggaaagtgggtccacca |
222 |
Q |
| |
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|||||||||||| |||||||||||||| | |||||||||||||||||||||||||||||||||||||| | || || |||||| || ||||| ||| |
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| T |
8485374 |
aattaaattttggtttaatatttctgcctctatgaagcatgacatattggtctcatgtatgtataggccttttatctaatttttaaacatgggt---cca |
8485278 |
T |
|
| Q |
223 |
catatttgcaatttggattggacttgctgaatcta |
257 |
Q |
| |
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|| |||||||||||||||||||||||||| ||||| |
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| T |
8485277 |
cacatttgcaatttggattggacttgctggatcta |
8485243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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