View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0372_low_1 (Length: 775)
Name: NF0372_low_1
Description: NF0372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0372_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 273; Significance: 1e-152; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 98 - 402
Target Start/End: Original strand, 30831065 - 30831368
Alignment:
| Q |
98 |
aaaaaacctgaaagaatccccaatctttgcaagcaaggtgaaacttaaccaattctgaactcccaaattcttgtgaatgcaacttatacatatcaataac |
197 |
Q |
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| T |
30831065 |
aaaagacctgaaagaatccccaatctttgcaagcaaggtgaaacttaagcaattctgaacttccaaattcttctgaatgcaacttatacatatcaataac |
30831164 |
T |
|
| Q |
198 |
tggaatttcaaggttagtatcaacttcagatagaatcaagtcttgatgattaggctgaatgtatcttggtggaacggttgaaatctttccatctttagct |
297 |
Q |
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| T |
30831165 |
tggaatttgaaggttagtatcaacttcagatagaatcaagtcttgatgattaggctgaatgtatcttggtggaacggttgaaatctttccatctttagct |
30831264 |
T |
|
| Q |
298 |
aactcttgaactgatggtaccaaaagagaagttcctgatggattcttgaatttttccatcttcccctttgttaatattttgttttatcaagatgtgtctt |
397 |
Q |
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| T |
30831265 |
aactcttgaactgatggtaccaaaagagaagttcctgatggattcttgaatttttccatctt-ccctttgttaatattttattttatcaagatgtgtctt |
30831363 |
T |
|
| Q |
398 |
tgtta |
402 |
Q |
| |
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||||| |
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| T |
30831364 |
tgtta |
30831368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 98 - 346
Target Start/End: Original strand, 30836491 - 30836739
Alignment:
| Q |
98 |
aaaaaacctgaaagaatccccaatctttgcaagcaaggtgaaacttaaccaattctgaactcccaaattcttgtgaatgcaacttatacatatcaataac |
197 |
Q |
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| T |
30836491 |
aaaagacctgaaagaaaccccaatctttgcaagcaaggtgaagcttaaccaattctgaactcccaagttcttctgaatgcaacttatacatatcaataac |
30836590 |
T |
|
| Q |
198 |
tggaatttcaaggttagtatcaacttcagatagaatcaagtcttgatgattaggctgaatgtatcttggtggaacggttgaaatctttccatctttagct |
297 |
Q |
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| T |
30836591 |
tggaatttgaaggttagtatcaacttcagagagaatcaagtcttgatgattaggctgaatgtatcttggtggaacggttgaaatatttccatctttagat |
30836690 |
T |
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| Q |
298 |
aactcttgaactgatggtaccaaaagagaagttcctgatggattcttga |
346 |
Q |
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|||||||||||||||||||||||||||||||| |||||||| ||||||| |
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| T |
30836691 |
aactcttgaactgatggtaccaaaagagaagtacctgatgggttcttga |
30836739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 414 - 587
Target Start/End: Original strand, 30831416 - 30831587
Alignment:
| Q |
414 |
aaccaatcctctttatcgaatgaccaccacatgcattattgatttgaaagagagaaatctattttgtttgtatcttggttgaacacacactctctttgtg |
513 |
Q |
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| T |
30831416 |
aacctatcctctttatcgaatgaccaccacatgcattattgatttgaaagag--aaatctattttgtttgtatcttggttgaacacacactctctttgtg |
30831513 |
T |
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| Q |
514 |
gtctcaattataaataaaactactttcgtctatggtgaattttggcgatttagggttatgctaacgtgtatcct |
587 |
Q |
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| T |
30831514 |
gtctcaattataaataaaactacttttgtctatggtgaattttcgcgatttagaattatgctaacgtgtgtcct |
30831587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 103 - 346
Target Start/End: Original strand, 30854246 - 30854486
Alignment:
| Q |
103 |
acctgaaagaatccccaatctttgcaagcaaggtgaaacttaaccaattctgaactcccaaattcttgtgaatgcaacttatacatatcaataactggaa |
202 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||| ||||| ||| |||| || | ||||||||||||||||| |
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| T |
30854246 |
acctgaaagaatccccaatctttgcaagcaaggtgaagcttagacaattctaaactcccatattctaaagaaagcaatttcttcatatcaataactggaa |
30854345 |
T |
|
| Q |
203 |
tttcaaggttagtatcaacttcagatagaatcaagtcttgatgattaggctgaatgtatcttggtggaacggttgaaatctttccatctttagctaactc |
302 |
Q |
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||||||| || ||| | ||||| | | ||| || | || | || |||||| |||||||||||||| |||||||| ||| || ||||| ||||| |
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| T |
30854346 |
tttcaagtatactattagcttcattgatgaccaattcatcgtgttgagactgaatatatcttggtggaactgttgaaattttt---tccttagccaactc |
30854442 |
T |
|
| Q |
303 |
ttgaactgatggtaccaaaagagaagttcctgatggattcttga |
346 |
Q |
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||||||||||||||||| |||||||||||| || || ||||||| |
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| T |
30854443 |
ttgaactgatggtaccagaagagaagttccagaggggttcttga |
30854486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 103 - 346
Target Start/End: Original strand, 30841733 - 30841973
Alignment:
| Q |
103 |
acctgaaagaatccccaatctttgcaagcaaggtgaaacttaaccaattctgaactcccaaattcttgtgaatgcaacttatacatatcaataactggaa |
202 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||| |||| ||||||| |||||||| ||||| ||| |||| || | ||||||||||||||||| |
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| T |
30841733 |
acctggaagaatccccaatctttgcaagcaaggtgaagcttagacaattctaaactcccatattctaaagaaagcaatttcttcatatcaataactggaa |
30841832 |
T |
|
| Q |
203 |
tttcaaggttagtatcaacttcagatagaatcaagtcttgatgattaggctgaatgtatcttggtggaacggttgaaatctttccatctttagctaactc |
302 |
Q |
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||||||| || ||| | ||||| | | ||| |||| ||| | || |||||| ||||||| |||||| |||||||||||| || ||||| || || |
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| T |
30841833 |
tttcaagtatactattagcttcattgatgaccaattcttcatgttgagactgaatatatcttgctggaactgttgaaatcttt---tccttagccaattc |
30841929 |
T |
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| Q |
303 |
ttgaactgatggtaccaaaagagaagttcctgatggattcttga |
346 |
Q |
| |
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||| ||||||||||||| |||||||||||| || || ||||||| |
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| T |
30841930 |
ttggactgatggtaccagaagagaagttccagaggggttcttga |
30841973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 706 - 745
Target Start/End: Original strand, 30831716 - 30831755
Alignment:
| Q |
706 |
aaccaatgttctaaagacgttgtttagcattttccataaa |
745 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| |
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| T |
30831716 |
aaccaatgttctaaagacgttgtttaacattttccataaa |
30831755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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