View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0372_low_10 (Length: 293)

Name: NF0372_low_10
Description: NF0372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0372_low_10
NF0372_low_10
[»] chr5 (1 HSPs)
chr5 (29-293)||(41463051-41463315)


Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 29 - 293
Target Start/End: Original strand, 41463051 - 41463315
Alignment:
Q  29 agaaatcatcttaataaataaataaacaagttggtagagtttcatgcatgaatatactctatatatactccatatatagatacaagcctgccatgaatca 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41463051 agaaatcatcttaataaataaataaacaagttggtagagtttcatgcatgaatatactctatatatactccatatatagatacaagcctgccatgaatca 41463150  T
Q  129 cacacatatcaccatttgctctctccttctatatacattttcctcatggaacatcccagcttatcattcttacccttccttttattttcaacaagtttca 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41463151 cacacatatcaccatttgctctctccttctatatacattttcctcatggaacatcccagcttatcattcttacccttccttttattttcaacaagtttca 41463250  T
Q  229 ttcttttcctcacacaaattctaaaattggtaaaaagaatattaagagtcacaaccaaagtacaa 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41463251 ttcttttcctcacacaaattctaaaattggtaaaaagaatattaagagtcacaaccaaagtacaa 41463315  T

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