View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0372_low_8 (Length: 303)
Name: NF0372_low_8
Description: NF0372
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0372_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 55 - 236
Target Start/End: Original strand, 47719780 - 47719961
Alignment:
| Q |
55 |
aaaatgcaccttagacgaataattgagttattttatttttgatattctttggtggatgagtcagtgaaacggatacatttgttattgattatttgttttg |
154 |
Q |
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| T |
47719780 |
aaaatgcaccttagacgaataattgagttattttatttttgatattctttggtggatgagtcagtgaaacggatacatttgttattgattatttgttttg |
47719879 |
T |
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| Q |
155 |
attctttcctggtcaatttgggcgtcttgcctttttggggttttgctgttgttgtagcctcctgtagtacctatgatgatgt |
236 |
Q |
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| T |
47719880 |
attctttcctggtcaatttgggcgtcttgcctttttggggttttgctgttgttgtagcctcctgtagtacctatgatgatgt |
47719961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 69 - 236
Target Start/End: Original strand, 47726786 - 47726953
Alignment:
| Q |
69 |
acgaataattgagttattttatttttgatattctttggtggatgagtcagtgaaacggatacatttgttattgattatttgttttgattctttcctggtc |
168 |
Q |
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| T |
47726786 |
acgaataattgagttattttatttttgatattctttggtggatgagtcagtgaaacggatacatttgttattgattatttgttttgattctttcctggtc |
47726885 |
T |
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| Q |
169 |
aatttgggcgtcttgcctttttggggttttgctgttgttgtagcctcctgtagtacctatgatgatgt |
236 |
Q |
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| T |
47726886 |
aatttgggcgtcttgcctttttggggttttgctgttgttgtagcctcctgtagtacctatgatgatgt |
47726953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 69 - 196
Target Start/End: Original strand, 47748092 - 47748219
Alignment:
| Q |
69 |
acgaataattgagttattttatttttgatattctttggtggatgagtcagtgaaacggatacatttgttattgattatttgttttgattctttcctggtc |
168 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47748092 |
acgaataattgagttattttatttttgatattctttggtggatgagtcagtgaaacggatacatttgttattgattatttgttttgattctttcctggtc |
47748191 |
T |
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| Q |
169 |
aatttgggcgtcttgcctttttggggtt |
196 |
Q |
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| T |
47748192 |
aatttgggcgtcttgccttttaggggtt |
47748219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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