View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0373_high_1 (Length: 974)

Name: NF0373_high_1
Description: NF0373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0373_high_1
NF0373_high_1
[»] chr7 (18 HSPs)
chr7 (55-447)||(48089170-48089579)
chr7 (528-920)||(48089170-48089579)
chr7 (528-783)||(33002995-33003271)
chr7 (192-447)||(33002995-33003271)
chr7 (742-844)||(8405313-8405415)
chr7 (131-233)||(8405313-8405415)
chr7 (778-922)||(10703132-10703277)
chr7 (53-197)||(10703132-10703277)
chr7 (54-288)||(24657903-24658148)
chr7 (687-921)||(24657903-24658148)
chr7 (53-197)||(10702665-10702811)
chr7 (778-922)||(10702665-10702811)
chr7 (48-116)||(1691534-1691602)
chr7 (859-927)||(1691534-1691602)
chr7 (379-447)||(1692119-1692187)
chr7 (528-596)||(1692119-1692187)
chr7 (807-850)||(33003264-33003307)
chr7 (125-168)||(33003264-33003307)
[»] chr8 (12 HSPs)
chr8 (45-288)||(18075718-18075962)
chr8 (687-930)||(18075718-18075962)
chr8 (304-447)||(18076005-18076149)
chr8 (528-671)||(18076005-18076149)
chr8 (863-929)||(11995260-11995326)
chr8 (46-112)||(11995260-11995326)
chr8 (867-922)||(34697088-34697143)
chr8 (53-108)||(34697088-34697143)
chr8 (863-922)||(7681486-7681545)
chr8 (53-112)||(7681486-7681545)
chr8 (53-112)||(44873209-44873268)
chr8 (863-922)||(44873209-44873268)
[»] chr2 (12 HSPs)
chr2 (51-288)||(40372655-40372892)
chr2 (687-924)||(40372655-40372892)
chr2 (687-927)||(2081599-2081835)
chr2 (48-288)||(2081599-2081835)
chr2 (55-207)||(6141389-6141542)
chr2 (768-920)||(6141389-6141542)
chr2 (53-197)||(18458704-18458852)
chr2 (778-922)||(18458704-18458852)
chr2 (304-423)||(40372931-40373050)
chr2 (552-671)||(40372931-40373050)
chr2 (60-110)||(34189947-34189997)
chr2 (865-915)||(34189947-34189997)
[»] chr4 (12 HSPs)
chr4 (53-208)||(2185135-2185290)
chr4 (767-922)||(2185135-2185290)
chr4 (759-843)||(2201210-2201294)
chr4 (132-216)||(2201210-2201294)
chr4 (53-112)||(36247751-36247810)
chr4 (863-922)||(36247751-36247810)
chr4 (55-112)||(4377162-4377219)
chr4 (863-920)||(4377162-4377219)
chr4 (788-839)||(54054455-54054506)
chr4 (136-187)||(54054455-54054506)
chr4 (875-922)||(54054716-54054763)
chr4 (53-100)||(54054716-54054763)
[»] chr3 (14 HSPs)
chr3 (56-208)||(8034690-8034838)
chr3 (767-919)||(8034690-8034838)
chr3 (767-922)||(7728915-7729072)
chr3 (53-208)||(7728915-7729072)
chr3 (51-111)||(38572544-38572604)
chr3 (864-924)||(38572544-38572604)
chr3 (54-112)||(24309801-24309859)
chr3 (863-921)||(24309801-24309859)
chr3 (863-923)||(52309320-52309377)
chr3 (52-112)||(52309320-52309377)
chr3 (51-88)||(11640613-11640650)
chr3 (887-924)||(11640613-11640650)
chr3 (131-168)||(30201521-30201558)
chr3 (807-844)||(30201521-30201558)
[»] chr1 (10 HSPs)
chr1 (180-258)||(36420536-36420614)
chr1 (717-795)||(36420536-36420614)
chr1 (767-843)||(42311479-42311555)
chr1 (132-208)||(42311479-42311555)
chr1 (863-915)||(39299273-39299325)
chr1 (60-112)||(39299273-39299325)
chr1 (54-93)||(41006125-41006164)
chr1 (882-921)||(41006125-41006164)
chr1 (53-95)||(36420500-36420542)
chr1 (880-922)||(36420500-36420542)
[»] chr5 (6 HSPs)
chr5 (863-921)||(7607393-7607451)
chr5 (54-112)||(7607393-7607451)
chr5 (51-110)||(26459614-26459673)
chr5 (865-924)||(26459614-26459673)
chr5 (51-112)||(36744858-36744920)
chr5 (863-924)||(36744858-36744920)
[»] chr6 (6 HSPs)
chr6 (51-112)||(33704025-33704086)
chr6 (863-924)||(33704025-33704086)
chr6 (51-112)||(35187961-35188022)
chr6 (863-924)||(35187961-35188022)
chr6 (52-111)||(21883171-21883230)
chr6 (864-923)||(21883171-21883230)


Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 55 - 447
Target Start/End: Original strand, 48089170 - 48089579
Alignment:
Q  55 gatccagactttaggtacatgtggagttaaaatttcaaataaataataatacaaactaaatgnnnnnnnnaatcaacaaatattattctcgttgagattg 154  Q
    |||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||        ||||||||||||||||||| ||||||||||    
T  48089170 gatccagattttaagtacatgtggagttaaaatttcaaataaataataatgcaaactaaatgttttttttaatcaacaaatattattcttgttgagattg 48089269  T
Q  155 tgtaagaaacacaaaaactcacggatcaaatagtctaaaatacagtagtgtgctcttacaaaggtgctaaaagcaaaagaacaagcacctgccaacctaa 254  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48089270 tgtaagaaacacaaaaactcg-ggatcaaatagtctaaaatacagtagtgtgctcttacaaaggtgctaaaagcaaaagaacaagcacctgccaacctaa 48089368  T
Q  255 tacttagcaatttcataaaaataaacactatgca------------------ctaaagtgacaatagaagcagctgcacaccaaaactaaggggatgaga 336  Q
    ||||||||||||||||||||||||||||||||||                  ||||||||||||||||||||||||||||||||||||||||||||||||    
T  48089369 tacttagcaatttcataaaaataaacactatgcacaccaaaaatacttaccgctaaagtgacaatagaagcagctgcacaccaaaactaaggggatgaga 48089468  T
Q  337 ttgaaagttgagagagaggataagaagagggcaagaggtgcgcgggactcagggaaaagggaaaaagacagagttatttactgagttactgattttgtgt 436  Q
    ||||||||||||||||||||||||||||||||||||||||| |  ||||||||| |||||||||| |||| |||||||||||||||||||||||||||||    
T  48089469 ttgaaagttgagagagaggataagaagagggcaagaggtgcacatgactcaggggaaagggaaaaggacatagttatttactgagttactgattttgtgt 48089568  T
Q  437 tttattaatta 447  Q
    |||||||||||    
T  48089569 tttattaatta 48089579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 528 - 920
Target Start/End: Complemental strand, 48089579 - 48089170
Alignment:
Q  528 taattaataaaacacaaaatcagtaactcagtaaataactctgtctttttcccttttccctgagtcccgcgcacctcttgccctcttcttatcctctctc 627  Q
    |||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||  | ||||||||||||||||||||||||||||||    
T  48089579 taattaataaaacacaaaatcagtaactcagtaaataactatgtccttttccctttcccctgagtcatgtgcacctcttgccctcttcttatcctctctc 48089480  T
Q  628 tcaactttcaatctcatccccttagttttggtgtgcagctgcttctattgtcactttag------------------tgcatagtgtttatttttatgaa 709  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||||||||    
T  48089479 tcaactttcaatctcatccccttagttttggtgtgcagctgcttctattgtcactttagcggtaagtatttttggtgtgcatagtgtttatttttatgaa 48089380  T
Q  710 attgctaagtattaggttggcaggtgcttgttcttttgcttttagcacctttgtaagagcacactactgtattttagactatttgatccgtgagtttttg 809  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  48089379 attgctaagtattaggttggcaggtgcttgttcttttgcttttagcacctttgtaagagcacactactgtattttagactatttgatcc-cgagtttttg 48089281  T
Q  810 tgtttcttacacaatctcaacgagaataatatttgttgattnnnnnnnncatttagtttgtattattatttatttgaaattttaactccacatgtaccta 909  Q
    ||||||||||||||||||||| |||||||||||||||||||        ||||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  48089280 tgtttcttacacaatctcaacaagaataatatttgttgattaaaaaaaacatttagtttgcattattatttatttgaaattttaactccacatgtactta 48089181  T
Q  910 aagtctggatc 920  Q
    || ||||||||    
T  48089180 aaatctggatc 48089170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 528 - 783
Target Start/End: Original strand, 33002995 - 33003271
Alignment:
Q  528 taattaataaaacacaaaatcagtaactcagtaaataactctgtctttttcccttttccctgagtcccgcgcacctcttgccctcttcttatcctctctc 627  Q
    ||||| |||||||||||||  ||| ||||||||||||||||| || |||||||||| || ||||||  |||  |||||||||||| ||| ||||||||||    
T  33002995 taattgataaaacacaaaagaagtgactcagtaaataactctctccttttccctttcccttgagtcatgcgtgcctcttgccctcctctcatcctctctc 33003094  T
Q  628 tcaactttcaatctcatccccttag-ttttggtgtgcagctgcttctat------tgtcactttag--------------tgcatagtgtttatttttat 706  Q
    |||||||||||||||||| |||||| ||||||||||  | |||||||||      ||| |||||||              ||||| ||||||||||||||    
T  33003095 tcaactttcaatctcatctccttagtttttggtgtgatgttgcttctatgtggtatgttactttagcagtaagcattttttgcatggtgtttatttttat 33003194  T
Q  707 gaaattgctaagtattaggttggcaggtgcttgttcttttgcttttagcacctttgtaagagcacactactgtattt 783  Q
    | ||||||  ||||||  ||||||||||||||| | |||||||||| | ||||||||||||| |||||| |||||||    
T  33003195 ggaattgccgagtattgagttggcaggtgcttgcttttttgcttttgggacctttgtaagaggacactattgtattt 33003271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 192 - 447
Target Start/End: Complemental strand, 33003271 - 33002995
Alignment:
Q  192 aaatacagtagtgtgctcttacaaaggtgctaaaagcaaaagaacaagcacctgccaacctaatacttagcaatttcataaaaataaacactatgca--- 288  Q
    ||||||| |||||| ||||||||||||| | |||||||||| | |||||||||||||||  ||||||  |||||| ||||||||||||||| |||||       
T  33003271 aaatacaatagtgtcctcttacaaaggtcccaaaagcaaaaaagcaagcacctgccaactcaatactcggcaattccataaaaataaacaccatgcaaaa 33003172  T
Q  289 -----------ctaaagtgaca------atagaagcagctgcacaccaaaa-ctaaggggatgagattgaaagttgagagagaggataagaagagggcaa 370  Q
               ||||||| |||      ||||||||| |  |||||||||| |||||| |||||||||||||||||||||||||||| ||| ||||||||    
T  33003171 aatgcttactgctaaagtaacataccacatagaagcaacatcacaccaaaaactaaggagatgagattgaaagttgagagagaggatgagaggagggcaa 33003072  T
Q  371 gaggtgcgcgggactcagggaaaagggaaaaagacagagttatttactgagttactgattttgtgttttattaatta 447  Q
    ||||  |||  |||||| || |||||||||| || ||||||||||||||||| |||  ||||||||||||| |||||    
T  33003071 gaggcacgcatgactcaagggaaagggaaaaggagagagttatttactgagtcacttcttttgtgttttatcaatta 33002995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 742 - 844
Target Start/End: Original strand, 8405313 - 8405415
Alignment:
Q  742 cttttgcttttagcacctttgtaagagcacactactgtattttagactatttgatccgtgagtttttgtgtttcttacacaatctcaacgagaataatat 841  Q
    ||||||||||| ||| |||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||| |||| ||||||| || ||||||||||    
T  8405313 cttttgcttttggcatctttgtaagagcacactactgtgttttagactttttgatccgcgagtttttgtgtttattacccaatctcgacaagaataatat 8405412  T
Q  842 ttg 844  Q
    |||    
T  8405413 ttg 8405415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 131 - 233
Target Start/End: Complemental strand, 8405415 - 8405313
Alignment:
Q  131 caaatattattctcgttgagattgtgtaagaaacacaaaaactcacggatcaaatagtctaaaatacagtagtgtgctcttacaaaggtgctaaaagcaa 230  Q
    ||||||||||||| || ||||||| |||| |||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||| ||| ||||||||    
T  8405415 caaatattattcttgtcgagattgggtaataaacacaaaaactcgcggatcaaaaagtctaaaacacagtagtgtgctcttacaaagatgccaaaagcaa 8405316  T
Q  231 aag 233  Q
    |||    
T  8405315 aag 8405313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 778 - 922
Target Start/End: Original strand, 10703132 - 10703277
Alignment:
Q  778 gtattttagactatttgatccgtgagtttttgtgtttcttacacaatctcaacgagaataatatttgttgattnnnnnnnn-catttagtttgtattatt 876  Q
    |||| |||| |||||||||  | |||||||||||||||||| ||||||||  |||||||||||||||| ||||         ||||||||||| ||||||    
T  10703132 gtatgttaggctatttgatatgcgagtttttgtgtttcttatacaatctcgtcgagaataatatttgtcgattaaaaaaattcatttagtttgcattatt 10703231  T
Q  877 atttatttgaaattttaactccacatgtacctaaagtctggatccg 922  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||    
T  10703232 atttatttgacattttaactccacatatacctaaagtctggatccg 10703277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 53 - 197
Target Start/End: Complemental strand, 10703277 - 10703132
Alignment:
Q  53 cggatccagactttaggtacatgtggagttaaaatttcaaataaataataatacaaactaaatg-nnnnnnnnaatcaacaaatattattctcgttgaga 151  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||         |||| ||||||||||||||||  ||||    
T  10703277 cggatccagactttaggtatatgtggagttaaaatgtcaaataaataataatgcaaactaaatgaatttttttaatcgacaaatattattctcgacgaga 10703178  T
Q  152 ttgtgtaagaaacacaaaaactcacggatcaaatagtctaaaatac 197  Q
    |||| |||||||||||||||||| |  ||||||||| |||| ||||    
T  10703177 ttgtataagaaacacaaaaactcgcatatcaaatagcctaacatac 10703132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 54 - 288
Target Start/End: Original strand, 24657903 - 24658148
Alignment:
Q  54 ggatccagactttaggtacatgtggagttaaaatttcaaataaataataatacaaactaaatgnnnnnnnn--aatcaacaaatattattctcgttgaga 151  Q
    ||||||||| ||||| || ||||||||||||||||| |||||||||||||| |||||||  |           |||| | |||| |||||||| |  |||    
T  24657903 ggatccagattttagatatatgtggagttaaaattttaaataaataataatgcaaactatttttattttttttaatcgataaattttattctcatcaaga 24658002  T
Q  152 ttgtgtaagaaacacaaaaactcacggatcaaatagtctaaaat--acagtagtgtgctc-------ttacaaaggtgctaaaagcaaaagaacaagcac 242  Q
    |||||||||||||| |||||||| ||||||||||||| ||||||  ||||||||||||||       |||||||||||| |||||||||||| ||| |||    
T  24658003 ttgtgtaagaaacataaaaactcgcggatcaaatagtttaaaatacacagtagtgtgctcttacaagttacaaaggtgccaaaagcaaaagagcaaacac 24658102  T
Q  243 ctgccaacctaatacttagcaatttcataaaaataaacactatgca 288  Q
     |||||||| |||||| | |||||  ||||||||||||| ||||||    
T  24658103 atgccaacccaatactcaacaattctataaaaataaacattatgca 24658148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 687 - 921
Target Start/End: Complemental strand, 24658148 - 24657903
Alignment:
Q  687 tgcatagtgtttatttttatgaaattgctaagtattaggttggcaggtgcttgttcttttgcttttagcacctttgtaa-------gagcacactactgt 779  Q
    |||||| |||||||||||||  ||||| | |||||| |||||||| ||| ||| |||||||||||| ||||||||||||       ||||||||||||||    
T  24658148 tgcataatgtttatttttatagaattgttgagtattgggttggcatgtgtttgctcttttgcttttggcacctttgtaacttgtaagagcacactactgt 24658049  T
Q  780 --attttagactatttgatccgtgagtttttgtgtttcttacacaatctcaacgagaataatatttgttgatt--nnnnnnnncatttagtttgtattat 875  Q
      |||||| ||||||||||||| |||||||| |||||||||||||||||  | |||||||| |||| | ||||           |  ||||||| |||||    
T  24658048 gtattttaaactatttgatccgcgagtttttatgtttcttacacaatcttgatgagaataaaatttatcgattaaaaaaaataaaaatagtttgcattat 24657949  T
Q  876 tatttatttgaaattttaactccacatgtacctaaagtctggatcc 921  Q
    ||||||||| ||||||||||||||||| || ||||| |||||||||    
T  24657948 tatttatttaaaattttaactccacatatatctaaaatctggatcc 24657903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 53 - 197
Target Start/End: Original strand, 10702665 - 10702811
Alignment:
Q  53 cggatccagactttaggtacatgtggagttaaaatttcaaataaataataatacaaactaaatg--nnnnnnnnaatcaacaaatattattctcgttgag 150  Q
    ||||||| ||||||||||| |||||||| |||||| |||||||||||||||| |||||||||||          |||| | || |||||||||||| |||    
T  10702665 cggatcctgactttaggtatatgtggagctaaaatgtcaaataaataataatgcaaactaaatgatttttttttaatcgagaattattattctcgtcgag 10702764  T
Q  151 attgtgtaagaaacacaaaaactcacggatcaaatagtctaaaatac 197  Q
    |||||||||||||||||||||||  |  |||||||||||||| ||||    
T  10702765 attgtgtaagaaacacaaaaacttgcatatcaaatagtctaacatac 10702811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 778 - 922
Target Start/End: Complemental strand, 10702811 - 10702665
Alignment:
Q  778 gtattttagactatttgatccgtgagtttttgtgtttcttacacaatctcaacgagaataatatttgttgattnnnnnnnn--catttagtttgtattat 875  Q
    |||| ||||||||||||||  |  |||||||||||||||||||||||||| |||||||||||| || | ||||          ||||||||||| |||||    
T  10702811 gtatgttagactatttgatatgcaagtttttgtgtttcttacacaatctcgacgagaataataattctcgattaaaaaaaaatcatttagtttgcattat 10702712  T
Q  876 tatttatttgaaattttaactccacatgtacctaaagtctggatccg 922  Q
    ||||||||||| |||||| |||||||| ||||||||||| |||||||    
T  10702711 tatttatttgacattttagctccacatatacctaaagtcaggatccg 10702665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 1691534 - 1691602
Alignment:
Q  48 agagacggatccagactttaggtacatgtggagttaaaatttcaaataaataataatacaaactaaatg 116  Q
    ||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||  ||||||||||    
T  1691534 agagacggatcgagactttaggtatatgtggagctaaaatttcaaataaataataatgaaaactaaatg 1691602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 859 - 927
Target Start/End: Complemental strand, 1691602 - 1691534
Alignment:
Q  859 catttagtttgtattattatttatttgaaattttaactccacatgtacctaaagtctggatccgtctct 927  Q
    ||||||||||  ||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||    
T  1691602 catttagttttcattattatttatttgaaattttagctccacatatacctaaagtctcgatccgtctct 1691534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 379 - 447
Target Start/End: Original strand, 1692119 - 1692187
Alignment:
Q  379 cgggactcagggaaaagggaaaaagacagagttatttactgagttactgattttgtgttttattaatta 447  Q
    ||||| |||||| ||||||||||||| |||||||||||| |||| |||  ||||||||||||| |||||    
T  1692119 cgggattcaggggaaagggaaaaagagagagttatttaccgagtcacttcttttgtgttttatcaatta 1692187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 528 - 596
Target Start/End: Complemental strand, 1692187 - 1692119
Alignment:
Q  528 taattaataaaacacaaaatcagtaactcagtaaataactctgtctttttcccttttccctgagtcccg 596  Q
    ||||| |||||||||||||  ||| |||| |||||||||||| ||||||||||||| |||||| |||||    
T  1692187 taattgataaaacacaaaagaagtgactcggtaaataactctctctttttccctttcccctgaatcccg 1692119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 807 - 850
Target Start/End: Original strand, 33003264 - 33003307
Alignment:
Q  807 ttgtgtttcttacacaatctcaacgagaataatatttgttgatt 850  Q
    |||| |||||||||||||||| ||||||| ||||||||||||||    
T  33003264 ttgtatttcttacacaatctcgacgagaacaatatttgttgatt 33003307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 168
Target Start/End: Complemental strand, 33003307 - 33003264
Alignment:
Q  125 aatcaacaaatattattctcgttgagattgtgtaagaaacacaa 168  Q
    |||||||||||||| ||||||| |||||||||||||||| ||||    
T  33003307 aatcaacaaatattgttctcgtcgagattgtgtaagaaatacaa 33003264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 145; Significance: 8e-76; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 145; E-Value: 8e-76
Query Start/End: Original strand, 45 - 288
Target Start/End: Original strand, 18075718 - 18075962
Alignment:
Q  45 agcagagacggatccagactttaggtacatgtggagttaaaatttcaaataaataataatacaaactaaatgnnnnnnnnaa-tcaacaaatattattct 143  Q
    ||||| ||| ||| || ||||||||||||||||||  ||||||||||||||||||||||| |||||||||||         | |||||||||||||||||    
T  18075718 agcagggacagatacatactttaggtacatgtggaactaaaatttcaaataaataataatgcaaactaaatgtttttttttagtcaacaaatattattct 18075817  T
Q  144 cgttgagattgtgtaagaaacacaaaaactcacggatcaaatagtctaaaatacagtagtgtgctcttacaaaggtgctaaaagcaaaagaacaagcacc 243  Q
    |||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||    
T  18075818 cgtcaagattgtgtaagaaacacaaaaactcgcggatcaaatagtctaaaatacagtagtgtgctcatacaaaggtgctaaaagcaaaagagcaagcacc 18075917  T
Q  244 tgccaacctaatacttagcaatttcataaaaataaacactatgca 288  Q
    |||||||| |||||| | ||||| |||||||||||||||||||||    
T  18075918 tgccaacccaatactcaacaattccataaaaataaacactatgca 18075962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 145; E-Value: 8e-76
Query Start/End: Original strand, 687 - 930
Target Start/End: Complemental strand, 18075962 - 18075718
Alignment:
Q  687 tgcatagtgtttatttttatgaaattgctaagtattaggttggcaggtgcttgttcttttgcttttagcacctttgtaagagcacactactgtattttag 786  Q
    ||||||||||||||||||||| ||||| | |||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  18075962 tgcatagtgtttatttttatggaattgttgagtattgggttggcaggtgcttgctcttttgcttttagcacctttgtatgagcacactactgtattttag 18075863  T
Q  787 actatttgatccgtgagtttttgtgtttcttacacaatctcaacgagaataatatttgttga-ttnnnnnnnncatttagtttgtattattatttatttg 885  Q
    ||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||| |         ||||||||||| |||||||||||||||    
T  18075862 actatttgatccgcgagtttttgtgtttcttacacaatcttgacgagaataatatttgttgactaaaaaaaaacatttagtttgcattattatttatttg 18075763  T
Q  886 aaattttaactccacatgtacctaaagtctggatccgtctctgct 930  Q
    ||||||||  |||||||||||||||||| || ||| ||| |||||    
T  18075762 aaattttagttccacatgtacctaaagtatgtatctgtccctgct 18075718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 304 - 447
Target Start/End: Original strand, 18076005 - 18076149
Alignment:
Q  304 aagcagctgcacaccaaaactaaggggatgagattgaaagttgagagagaggataagaagagggcaagaggtgcgcgggactcagggaaaaggg-aaaaa 402  Q
    ||||||| ||||| |||||||||||||| ||||||||||||||||||||||||| | |||||||||||||| |||| |||||| |||||||||| |||||    
T  18076005 aagcagcagcacatcaaaactaaggggacgagattgaaagttgagagagaggatgacaagagggcaagaggcgcgcaggactccgggaaaagggaaaaaa 18076104  T
Q  403 gacagagttatttactgagttactgattttgtgttttattaatta 447  Q
    || |||||||||||| ||||||||  ||||||||||||| |||||    
T  18076105 gagagagttatttaccgagttacttcttttgtgttttatcaatta 18076149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 528 - 671
Target Start/End: Complemental strand, 18076149 - 18076005
Alignment:
Q  528 taattaataaaacacaaaatcagtaactcagtaaataactctgtcttttt-cccttttccctgagtcccgcgcacctcttgccctcttcttatcctctct 626  Q
    ||||| |||||||||||||  |||||||| |||||||||||| ||||||| |||||||||| |||||| |||| |||||||||||||| | |||||||||    
T  18076149 taattgataaaacacaaaagaagtaactcggtaaataactctctcttttttcccttttcccggagtcctgcgcgcctcttgccctcttgtcatcctctct 18076050  T
Q  627 ctcaactttcaatctcatccccttagttttggtgtgcagctgctt 671  Q
    |||||||||||||||| |||||||||||||| ||||| |||||||    
T  18076049 ctcaactttcaatctcgtccccttagttttgatgtgctgctgctt 18076005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 863 - 929
Target Start/End: Original strand, 11995260 - 11995326
Alignment:
Q  863 tagtttgtattattatttatttgaaattttaactccacatgtacctaaagtctggatccgtctctgc 929  Q
    |||||||||||||||||||||| |||||||| |||||||| |||||||||| |||||||||||||||    
T  11995260 tagtttgtattattatttatttaaaattttagctccacatatacctaaagtttggatccgtctctgc 11995326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 11995326 - 11995260
Alignment:
Q  46 gcagagacggatccagactttaggtacatgtggagttaaaatttcaaataaataataatacaaacta 112  Q
    ||||||||||||||| |||||||||| |||||||| |||||||| ||||||||||||||||||||||    
T  11995326 gcagagacggatccaaactttaggtatatgtggagctaaaattttaaataaataataatacaaacta 11995260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 867 - 922
Target Start/End: Original strand, 34697088 - 34697143
Alignment:
Q  867 ttgtattattatttatttgaaattttaactccacatgtacctaaagtctggatccg 922  Q
    ||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  34697088 ttgtactattatttatttaaaattttagctccacatgtacctaaagtctggatccg 34697143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 108
Target Start/End: Complemental strand, 34697143 - 34697088
Alignment:
Q  53 cggatccagactttaggtacatgtggagttaaaatttcaaataaataataatacaa 108  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||| |||||    
T  34697143 cggatccagactttaggtacatgtggagctaaaattttaaataaataatagtacaa 34697088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 863 - 922
Target Start/End: Original strand, 7681486 - 7681545
Alignment:
Q  863 tagtttgtattattatttatttgaaattttaactccacatgtacctaaagtctggatccg 922  Q
    |||||||||||||||||| ||||||||||||||  ||||| |||| || |||| ||||||    
T  7681486 tagtttgtattattatttctttgaaattttaaccacacatataccaaatgtctagatccg 7681545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 7681545 - 7681486
Alignment:
Q  53 cggatccagactttaggtacatgtggagttaaaatttcaaataaataataatacaaacta 112  Q
    |||||| |||| || |||| |||||  |||||||||||||| ||||||||||||||||||    
T  7681545 cggatctagacatttggtatatgtgtggttaaaatttcaaagaaataataatacaaacta 7681486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 44873209 - 44873268
Alignment:
Q  53 cggatccagactttaggtacatgtggagttaaaatttcaaataaataataatacaaacta 112  Q
    ||||| ||||||||||||||||| |||| |||||||| ||| ||| |||||| |||||||    
T  44873209 cggattcagactttaggtacatgcggagctaaaattttaaagaaacaataatgcaaacta 44873268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 863 - 922
Target Start/End: Complemental strand, 44873268 - 44873209
Alignment:
Q  863 tagtttgtattattatttatttgaaattttaactccacatgtacctaaagtctggatccg 922  Q
    ||||||| |||||| ||| ||| |||||||| |||| ||||||||||||||||| |||||    
T  44873268 tagtttgcattattgtttctttaaaattttagctccgcatgtacctaaagtctgaatccg 44873209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 138; Significance: 1e-71; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 51 - 288
Target Start/End: Original strand, 40372655 - 40372892
Alignment:
Q  51 gacggatccagactttaggtacatgtggagttaaaatttcaaataaataataatacaaactaaatgnnnnnnnnaatcaacaaatattattctcgttgag 150  Q
    |||||||||||||||||||| ||||||||| ||| ||||||||||||||||||| | ||||||||         ||||||||||||| |||||||| |||    
T  40372655 gacggatccagactttaggtccatgtggagctaagatttcaaataaataataatgcgaactaaatattttttttaatcaacaaatatcattctcgtcgag 40372754  T
Q  151 attgtgtaagaaacacaaaaactcacggatcaaatagtctaaaatacagtagtgtgctcttacaaaggtgctaaaagcaaaagaacaagcacctgccaac 250  Q
    ||||||||||||| |||||||||||| ||||||||||||||||||| | |||||||||||||||||||||| |||||||||||| ||| |||||||||||    
T  40372755 attgtgtaagaaaaacaaaaactcacagatcaaatagtctaaaatatactagtgtgctcttacaaaggtgcaaaaagcaaaagagcaaacacctgccaac 40372854  T
Q  251 ctaatacttagcaatttcataaaaataaacactatgca 288  Q
      |||||| ||||||| |||||||||||||||||||||    
T  40372855 tcaatactcagcaattccataaaaataaacactatgca 40372892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 687 - 924
Target Start/End: Complemental strand, 40372892 - 40372655
Alignment:
Q  687 tgcatagtgtttatttttatgaaattgctaagtattaggttggcaggtgcttgttcttttgcttttagcacctttgtaagagcacactactgtattttag 786  Q
    ||||||||||||||||||||| ||||||| ||||||  ||||||||||| ||| |||||||||||| |||||||||||||||||||||| | ||||||||    
T  40372892 tgcatagtgtttatttttatggaattgctgagtattgagttggcaggtgtttgctcttttgctttttgcacctttgtaagagcacactagtatattttag 40372793  T
Q  787 actatttgatccgtgagtttttgtgtttcttacacaatctcaacgagaataatatttgttgattnnnnnnnncatttagtttgtattattatttatttga 886  Q
    ||||||||||| |||||||||||| |||||||||||||||| |||||||| |||||||||||||         |||||||| | ||||||||||||||||    
T  40372792 actatttgatctgtgagtttttgtttttcttacacaatctcgacgagaatgatatttgttgattaaaaaaaatatttagttcgcattattatttatttga 40372693  T
Q  887 aattttaactccacatgtacctaaagtctggatccgtc 924  Q
    ||| ||| ||||||||| ||||||||||||||||||||    
T  40372692 aatcttagctccacatggacctaaagtctggatccgtc 40372655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 687 - 927
Target Start/End: Original strand, 2081599 - 2081835
Alignment:
Q  687 tgcatagtgtttatttttatgaaattgctaagtattaggttggcaggtgcttgttcttttgcttttagcacctttgtaagagcacactactgtattttag 786  Q
    ||||||||||||||||||||| ||||||  |||||| |||||||||||||||| |||||||||||| |||||| |||||||||||||||| |||||||||    
T  2081599 tgcatagtgtttatttttatggaattgccgagtattgggttggcaggtgcttgctcttttgcttttggcacctctgtaagagcacactaccgtattttag 2081698  T
Q  787 actatttgatccgtgagtttttgtgtttcttacacaatctcaacgagaataatatttgttgattnnnnnnnncatttagtttgtattattatttatttga 886  Q
    ||||||||||||| |||||||||||||||||| |||||||| ||||||||||||||||| ||||         |  ||||||| ||||| ||||||||||    
T  2081699 actatttgatccgcgagtttttgtgtttcttagacaatctcgacgagaataatatttgtcgattaaata----aagtagtttgcattatcatttatttga 2081794  T
Q  887 aattttaactccacatgtacctaaagtctggatccgtctct 927  Q
    ||||||| ||||||||||||||||||| | |||||| ||||    
T  2081795 aattttagctccacatgtacctaaagtttagatccgcctct 2081835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 48 - 288
Target Start/End: Complemental strand, 2081835 - 2081599
Alignment:
Q  48 agagacggatccagactttaggtacatgtggagttaaaatttcaaataaataataatacaaactaaatgnnnnnnnnaatcaacaaatattattctcgtt 147  Q
    |||| |||||| | ||||||||||||||||||| ||||||||||||||||| ||||| |||||||  |         |||| |||||||||||||||||     
T  2081835 agaggcggatctaaactttaggtacatgtggagctaaaatttcaaataaatgataatgcaaactactt----tatttaatcgacaaatattattctcgtc 2081740  T
Q  148 gagattgtgtaagaaacacaaaaactcacggatcaaatagtctaaaatacagtagtgtgctcttacaaaggtgctaaaagcaaaagaacaagcacctgcc 247  Q
    |||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||| ||||||||||||    
T  2081739 gagattgtctaagaaacacaaaaactcgcggatcaaatagtctaaaatacggtagtgtgctcttacagaggtgccaaaagcaaaagagcaagcacctgcc 2081640  T
Q  248 aacctaatacttagcaatttcataaaaataaacactatgca 288  Q
    |||| ||||||  |||||| |||||||||||||||||||||    
T  2081639 aacccaatactcggcaattccataaaaataaacactatgca 2081599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 55 - 207
Target Start/End: Original strand, 6141389 - 6141542
Alignment:
Q  55 gatccagactttaggtacatgtggagttaaaatttcaaataaataataatacaaactaaatgnnnnnnnn-aatcaacaaatattattctcgttgagatt 153  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||          |||| ||||||||||||||||| ||||||    
T  6141389 gatccagactttaggtacatgtggagctaaaatttcaaataaataataatgcaaaccaaatctatttttttaatcgacaaatattattctcgtcgagatt 6141488  T
Q  154 gtgtaagaaacacaaaaactcacggatcaaatagtctaaaatacagtagtgtgc 207  Q
    ||||||||||||||||||||| |  ||||||||||| || ||||| ||||||||    
T  6141489 gtgtaagaaacacaaaaactcgcaaatcaaatagtcgaacatacactagtgtgc 6141542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 768 - 920
Target Start/End: Complemental strand, 6141542 - 6141389
Alignment:
Q  768 gcacactactgtattttagactatttgatccgtgagtttttgtgtttcttacacaatctcaacgagaataatatttgttgatt-nnnnnnnncatttagt 866  Q
    |||||||| ||||| || |||||||||||  | ||||||||||||||||||||||||||| ||||||||||||||||| ||||          |||| ||    
T  6141542 gcacactagtgtatgttcgactatttgatttgcgagtttttgtgtttcttacacaatctcgacgagaataatatttgtcgattaaaaaaatagatttggt 6141443  T
Q  867 ttgtattattatttatttgaaattttaactccacatgtacctaaagtctggatc 920  Q
    ||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6141442 ttgcattattatttatttgaaattttagctccacatgtacctaaagtctggatc 6141389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 53 - 197
Target Start/End: Original strand, 18458704 - 18458852
Alignment:
Q  53 cggatccagactttaggtacatgtggagttaaaatttcaaataaataataatacaaactaaatgnnnnnnnn----aatcaacaaatattattctcgttg 148  Q
    ||||||||| ||||||||| |||||||| |||||| |||||||||||||||| |||||||| ||            |||  ||||||||||||||||| |    
T  18458704 cggatccaggctttaggtatatgtggagctaaaatgtcaaataaataataatgcaaactaagtgaattttttttttaatttacaaatattattctcgtcg 18458803  T
Q  149 agattgtgtaagaaacacaaaaactcacggatcaaatagtctaaaatac 197  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  18458804 agattgtgtaagaaacacaaaaactcacagatcaaatagtctaacatac 18458852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 778 - 922
Target Start/End: Complemental strand, 18458852 - 18458704
Alignment:
Q  778 gtattttagactatttgatccgtgagtttttgtgtttcttacacaatctcaacgagaataatatttgttgatt----nnnnnnnncatttagtttgtatt 873  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||  |||            || |||||||| |||    
T  18458852 gtatgttagactatttgatctgtgagtttttgtgtttcttacacaatctcgacgagaataatatttgtaaattaaaaaaaaaattcacttagtttgcatt 18458753  T
Q  874 attatttatttgaaattttaactccacatgtacctaaagtctggatccg 922  Q
    ||||||||||||| |||||| |||||||| ||||||||| |||||||||    
T  18458752 attatttatttgacattttagctccacatatacctaaagcctggatccg 18458704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 304 - 423
Target Start/End: Original strand, 40372931 - 40373050
Alignment:
Q  304 aagcagctgcacaccaaaactaaggggatgagattgaaagttgagagagaggataagaagagggcaagaggtgcgcgggactcagggaaaagggaaaaag 403  Q
    |||||||  |||||||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||  ||||  ||||||||  ||||||||||      
T  40372931 aagcagcaacacaccaaaactaaggggatgagattgaaagttgagagtgaggatgagaagaggacaagagacgcgcaagactcaggagaaagggaaaaga 40373030  T
Q  404 acagagttatttactgagtt 423  Q
    | ||||||||||||||||||    
T  40373031 agagagttatttactgagtt 40373050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 552 - 671
Target Start/End: Complemental strand, 40373050 - 40372931
Alignment:
Q  552 aactcagtaaataactctgtctttttcccttttccctgagtcccgcgcacctcttgccctcttcttatcctctctctcaactttcaatctcatcccctta 651  Q
    |||||||||||||||||| |  ||||||||||  ||||||||  ||||  |||||| |||||||| |||||| |||||||||||||||||||||||||||    
T  40373050 aactcagtaaataactctcttcttttccctttctcctgagtcttgcgcgtctcttgtcctcttctcatcctcactctcaactttcaatctcatcccctta 40372951  T
Q  652 gttttggtgtgcagctgctt 671  Q
    |||||||||||  |||||||    
T  40372950 gttttggtgtgttgctgctt 40372931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 34189947 - 34189997
Alignment:
Q  60 agactttaggtacatgtggagttaaaatttcaaataaataataatacaaac 110  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  34189947 agactttaggtatatgtggagttaaaattttaaataaataataatacaaac 34189997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 865 - 915
Target Start/End: Complemental strand, 34189997 - 34189947
Alignment:
Q  865 gtttgtattattatttatttgaaattttaactccacatgtacctaaagtct 915  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||||||||    
T  34189997 gtttgtattattatttatttaaaattttaactccacatatacctaaagtct 34189947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 9e-42; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 53 - 208
Target Start/End: Original strand, 2185135 - 2185290
Alignment:
Q  53 cggatccagactttaggtacatgtggagttaaaatttcaaataaataataatacaaactaaatgnnnnnnnnaatcaacaaatattattctcgttgagat 152  Q
    |||||||| |||||||||| |||||||| ||||||||||||||||||||||  |||||||||||        |||| |||||||||||||| ||||||||    
T  2185135 cggatccaaactttaggtatatgtggagctaaaatttcaaataaataataactcaaactaaatgttttttttaatcgacaaatattattcttgttgagat 2185234  T
Q  153 tgtgtaagaaacacaaaaactcacggatcaaatagtctaaaatacagtagtgtgct 208  Q
    |||||||||||||||||||||| | ||||||||||||||| ||| |||||||||||    
T  2185235 tgtgtaagaaacacaaaaactcgcagatcaaatagtctaacatatagtagtgtgct 2185290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 9e-42
Query Start/End: Original strand, 767 - 922
Target Start/End: Complemental strand, 2185290 - 2185135
Alignment:
Q  767 agcacactactgtattttagactatttgatccgtgagtttttgtgtttcttacacaatctcaacgagaataatatttgttgattnnnnnnnncatttagt 866  Q
    ||||||||||| ||| ||||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||||| ||||        ||||||||    
T  2185290 agcacactactatatgttagactatttgatctgcgagtttttgtgtttcttacacaatctcaacaagaataatatttgtcgattaaaaaaaacatttagt 2185191  T
Q  867 ttgtattattatttatttgaaattttaactccacatgtacctaaagtctggatccg 922  Q
    |||  |||||||||||||||||||||| |||||||| |||||||||| ||||||||    
T  2185190 ttgagttattatttatttgaaattttagctccacatatacctaaagtttggatccg 2185135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 759 - 843
Target Start/End: Original strand, 2201210 - 2201294
Alignment:
Q  759 tttgtaagagcacactactgtattttagactatttgatccgtgagtttttgtgtttcttacacaatctcaacgagaataatattt 843  Q
    ||||||||||||| ||||||||||||||||||||||||| |  | |||||||||||||||||||||||| || ||||||||||||    
T  2201210 tttgtaagagcacgctactgtattttagactatttgatctgcaaatttttgtgtttcttacacaatctcgacaagaataatattt 2201294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 132 - 216
Target Start/End: Complemental strand, 2201294 - 2201210
Alignment:
Q  132 aaatattattctcgttgagattgtgtaagaaacacaaaaactcacggatcaaatagtctaaaatacagtagtgtgctcttacaaa 216  Q
    |||||||||||| || |||||||||||||||||||||||| |  | ||||||||||||||||||||||||| |||||||||||||    
T  2201294 aaatattattcttgtcgagattgtgtaagaaacacaaaaatttgcagatcaaatagtctaaaatacagtagcgtgctcttacaaa 2201210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 53 - 112
Target Start/End: Original strand, 36247751 - 36247810
Alignment:
Q  53 cggatccagactttaggtacatgtggagttaaaatttcaaataaataataatacaaacta 112  Q
    |||||||||||||||||||||||||||| |||||||| ||| ||| |||||| |||||||    
T  36247751 cggatccagactttaggtacatgtggagctaaaattttaaagaaacaataatgcaaacta 36247810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 863 - 922
Target Start/End: Complemental strand, 36247810 - 36247751
Alignment:
Q  863 tagtttgtattattatttatttgaaattttaactccacatgtacctaaagtctggatccg 922  Q
    ||||||| |||||| ||| ||| |||||||| ||||||||||||||||||||||||||||    
T  36247810 tagtttgcattattgtttctttaaaattttagctccacatgtacctaaagtctggatccg 36247751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 55 - 112
Target Start/End: Original strand, 4377162 - 4377219
Alignment:
Q  55 gatccagactttaggtacatgtggagttaaaatttcaaataaataataatacaaacta 112  Q
    |||||||||||||||||||||||||| || ||||||||| ||| |||||| |||||||    
T  4377162 gatccagactttaggtacatgtggagctataatttcaaagaaacaataatgcaaacta 4377219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 863 - 920
Target Start/End: Complemental strand, 4377219 - 4377162
Alignment:
Q  863 tagtttgtattattatttatttgaaattttaactccacatgtacctaaagtctggatc 920  Q
    ||||||| |||||| ||| ||||||||| || ||||||||||||||||||||||||||    
T  4377219 tagtttgcattattgtttctttgaaattatagctccacatgtacctaaagtctggatc 4377162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 788 - 839
Target Start/End: Original strand, 54054455 - 54054506
Alignment:
Q  788 ctatttgatccgtgagtttttgtgtttcttacacaatctcaacgagaataat 839  Q
    ||||||||| || ||||||||||||||||||||||||||| |||||| ||||    
T  54054455 ctatttgatgcgcgagtttttgtgtttcttacacaatctcgacgagattaat 54054506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 54054506 - 54054455
Alignment:
Q  136 attattctcgttgagattgtgtaagaaacacaaaaactcacggatcaaatag 187  Q
    |||| |||||| ||||||||||||||||||||||||||| || |||||||||    
T  54054506 attaatctcgtcgagattgtgtaagaaacacaaaaactcgcgcatcaaatag 54054455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 875 - 922
Target Start/End: Original strand, 54054716 - 54054763
Alignment:
Q  875 ttatttatttgaaattttaactccacatgtacctaaagtctggatccg 922  Q
    ||||||||||||||||||| ||||| |||||| |||||||||||||||    
T  54054716 ttatttatttgaaattttagctccatatgtacttaaagtctggatccg 54054763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 53 - 100
Target Start/End: Complemental strand, 54054763 - 54054716
Alignment:
Q  53 cggatccagactttaggtacatgtggagttaaaatttcaaataaataa 100  Q
    ||||||||||||||| |||||| ||||| |||||||||||||||||||    
T  54054763 cggatccagactttaagtacatatggagctaaaatttcaaataaataa 54054716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 1e-37; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 56 - 208
Target Start/End: Original strand, 8034690 - 8034838
Alignment:
Q  56 atccagactttaggtacatgtggagttaaaatttcaaataaataataatacaaactaaatgnnnnnnnnaatcaacaaatattattctcgttgagattgt 155  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |         |||| ||||||||||||||||| ||||||||    
T  8034690 atccagactttaggtacatgtggagctaaaatttcaaataaataataatgcaaactaatt----tttttaatcgacaaatattattctcgtcgagattgt 8034785  T
Q  156 gtaagaaacacaaaaactcacggatcaaatagtctaaaatacagtagtgtgct 208  Q
    |||||||||||||||| || | ||||||||||||||| ||||| |||||||||    
T  8034786 gtaagaaacacaaaaattcgcagatcaaatagtctaacatacaatagtgtgct 8034838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 767 - 919
Target Start/End: Complemental strand, 8034838 - 8034690
Alignment:
Q  767 agcacactactgtattttagactatttgatccgtgagtttttgtgtttcttacacaatctcaacgagaataatatttgttgattnnnnnnnncatttagt 866  Q
    ||||||||| ||||| ||||||||||||||| | || |||||||||||||||||||||||| ||||||||||||||||| ||||         | |||||    
T  8034838 agcacactattgtatgttagactatttgatctgcgaatttttgtgtttcttacacaatctcgacgagaataatatttgtcgattaaaaa----aattagt 8034743  T
Q  867 ttgtattattatttatttgaaattttaactccacatgtacctaaagtctggat 919  Q
    ||| ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  8034742 ttgcattattatttatttgaaattttagctccacatgtacctaaagtctggat 8034690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 767 - 922
Target Start/End: Original strand, 7728915 - 7729072
Alignment:
Q  767 agcacactactgtattttagactatttgatccgtgagtttttgtgtttcttacacaatctcaacgagaataatatttgttgatt-----nnnnnnnncat 861  Q
    ||||||||| ||||||||||||||||||||| | | |||||||||||||||||||||||||||||| |||||||||||||||||             |||    
T  7728915 agcacactagtgtattttagactatttgatctgcgggtttttgtgtttcttacacaatctcaacgataataatatttgttgattataaaaaaaaatacat 7729014  T
Q  862 ttagtttgtattattatttatttgaaattttaactccacatgtacctaaagtctggatccg 922  Q
    |||||||     ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7729015 ttagttt---acattatttatttgaaattttaactccacatgtacctaaagtctgaatccg 7729072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 53 - 208
Target Start/End: Complemental strand, 7729072 - 7728915
Alignment:
Q  53 cggatccagactttaggtacatgtggagttaaaatttcaaataaataataatacaaactaaatgnnnnnnnn-----aatcaacaaatattattctcgtt 147  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||     ||||||||||             ||||||||||||||||| |||||    
T  7729072 cggattcagactttaggtacatgtggagttaaaatttcaaataaataatgt---aaactaaatgtatttttttttataatcaacaaatattattatcgtt 7728976  T
Q  148 gagattgtgtaagaaacacaaaaactcacggatcaaatagtctaaaatacagtagtgtgct 208  Q
    ||||||||||||||||||||||||| | | ||||||||||||||||||||| |||||||||    
T  7728975 gagattgtgtaagaaacacaaaaacccgcagatcaaatagtctaaaatacactagtgtgct 7728915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 51 - 111
Target Start/End: Original strand, 38572544 - 38572604
Alignment:
Q  51 gacggatccagactttaggtacatgtggagttaaaatttcaaataaataataatacaaact 111  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  38572544 gacggatccagactttaggtacatgtggagataaaatttcaaataaataataaaacaaact 38572604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 7e-21
Query Start/End: Original strand, 864 - 924
Target Start/End: Complemental strand, 38572604 - 38572544
Alignment:
Q  864 agtttgtattattatttatttgaaattttaactccacatgtacctaaagtctggatccgtc 924  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  38572604 agtttgttttattatttatttgaaattttatctccacatgtacctaaagtctggatccgtc 38572544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 112
Target Start/End: Original strand, 24309801 - 24309859
Alignment:
Q  54 ggatccagactttaggtacatgtggagttaaaatttcaaataaataataatacaaacta 112  Q
    |||||||||||||||||||||| | || |||||||||||| ||| |||||| |||||||    
T  24309801 ggatccagactttaggtacatgcgaagctaaaatttcaaagaaacaataatgcaaacta 24309859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 863 - 921
Target Start/End: Complemental strand, 24309859 - 24309801
Alignment:
Q  863 tagtttgtattattatttatttgaaattttaactccacatgtacctaaagtctggatcc 921  Q
    ||||||| |||||| ||| |||||||||||| || | ||||||||||||||||||||||    
T  24309859 tagtttgcattattgtttctttgaaattttagcttcgcatgtacctaaagtctggatcc 24309801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 863 - 923
Target Start/End: Original strand, 52309320 - 52309377
Alignment:
Q  863 tagtttgtattattatttatttgaaattttaactccacatgtacctaaagtctggatccgt 923  Q
    |||||||||||||||||||||| ||||||||    ||||| ||||||||||||||||||||    
T  52309320 tagtttgtattattatttatttaaaatttta---gcacatatacctaaagtctggatccgt 52309377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 112
Target Start/End: Complemental strand, 52309377 - 52309320
Alignment:
Q  52 acggatccagactttaggtacatgtggagttaaaatttcaaataaataataatacaaacta 112  Q
    |||||||||||||||||||| |||||    |||||||| ||||||||||||||||||||||    
T  52309377 acggatccagactttaggtatatgtgc---taaaattttaaataaataataatacaaacta 52309320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 11640613 - 11640650
Alignment:
Q  51 gacggatccagactttaggtacatgtggagttaaaatt 88  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  11640613 gacggatctagactttaggtacatgtggagctaaaatt 11640650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 887 - 924
Target Start/End: Complemental strand, 11640650 - 11640613
Alignment:
Q  887 aattttaactccacatgtacctaaagtctggatccgtc 924  Q
    ||||||| ||||||||||||||||||||| ||||||||    
T  11640650 aattttagctccacatgtacctaaagtctagatccgtc 11640613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 168
Target Start/End: Original strand, 30201521 - 30201558
Alignment:
Q  131 caaatattattctcgttgagattgtgtaagaaacacaa 168  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  30201521 caaatattattctctttgaaattgtgtaagaaacacaa 30201558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 807 - 844
Target Start/End: Complemental strand, 30201558 - 30201521
Alignment:
Q  807 ttgtgtttcttacacaatctcaacgagaataatatttg 844  Q
    |||||||||||||||||| |||| ||||||||||||||    
T  30201558 ttgtgtttcttacacaatttcaaagagaataatatttg 30201521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 7e-27; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 180 - 258
Target Start/End: Original strand, 36420536 - 36420614
Alignment:
Q  180 tcaaatagtctaaaatacagtagtgtgctcttacaaaggtgctaaaagcaaaagaacaagcacctgccaacctaatact 258  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| || |||||||||||||    
T  36420536 tcaaatagtctaaaatacagtagtgtgctcttacaaaggtgccaaaagcaaaagagcaagcaactaccaacctaatact 36420614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 7e-27
Query Start/End: Original strand, 717 - 795
Target Start/End: Complemental strand, 36420614 - 36420536
Alignment:
Q  717 agtattaggttggcaggtgcttgttcttttgcttttagcacctttgtaagagcacactactgtattttagactatttga 795  Q
    ||||||||||||| || |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  36420614 agtattaggttggtagttgcttgctcttttgcttttggcacctttgtaagagcacactactgtattttagactatttga 36420536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 767 - 843
Target Start/End: Original strand, 42311479 - 42311555
Alignment:
Q  767 agcacactactgtattttagactatttgatccgtgagtttttgtgtttcttacacaatctcaacgagaataatattt 843  Q
    ||||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||    
T  42311479 agcacactactgtatattagactatttgatctgcgagtttttgtgtttcttacacaatctcgacgagaataatattt 42311555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 42311555 - 42311479
Alignment:
Q  132 aaatattattctcgttgagattgtgtaagaaacacaaaaactcacggatcaaatagtctaaaatacagtagtgtgct 208  Q
    ||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||    
T  42311555 aaatattattctcgtcgagattgtgtaagaaacacaaaaactcgcagatcaaatagtctaatatacagtagtgtgct 42311479  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 863 - 915
Target Start/End: Original strand, 39299273 - 39299325
Alignment:
Q  863 tagtttgtattattatttatttgaaattttaactccacatgtacctaaagtct 915  Q
    ||||||| |||||| ||| ||| ||||||||||||||||||||||||||||||    
T  39299273 tagtttgcattattgtttttttaaaattttaactccacatgtacctaaagtct 39299325  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 39299325 - 39299273
Alignment:
Q  60 agactttaggtacatgtggagttaaaatttcaaataaataataatacaaacta 112  Q
    |||||||||||||||||||||||||||||| ||| ||| |||||| |||||||    
T  39299325 agactttaggtacatgtggagttaaaattttaaaaaaacaataatgcaaacta 39299273  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 93
Target Start/End: Original strand, 41006125 - 41006164
Alignment:
Q  54 ggatccagactttaggtacatgtggagttaaaatttcaaa 93  Q
    |||||||||||||| |||||||||||| ||||||||||||    
T  41006125 ggatccagactttacgtacatgtggagctaaaatttcaaa 41006164  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 882 - 921
Target Start/End: Complemental strand, 41006164 - 41006125
Alignment:
Q  882 tttgaaattttaactccacatgtacctaaagtctggatcc 921  Q
    |||||||||||| |||||||||||| ||||||||||||||    
T  41006164 tttgaaattttagctccacatgtacgtaaagtctggatcc 41006125  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 36420500 - 36420542
Alignment:
Q  53 cggatccagactttaggtacatgtggagttaaaatttcaaata 95  Q
    |||||||||| ||||||||||| ||||| ||||||||||||||    
T  36420500 cggatccagattttaggtacatctggagctaaaatttcaaata 36420542  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 880 - 922
Target Start/End: Complemental strand, 36420542 - 36420500
Alignment:
Q  880 tatttgaaattttaactccacatgtacctaaagtctggatccg 922  Q
    |||||||||||||| ||||| ||||||||||| ||||||||||    
T  36420542 tatttgaaattttagctccagatgtacctaaaatctggatccg 36420500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 4e-22; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 863 - 921
Target Start/End: Original strand, 7607393 - 7607451
Alignment:
Q  863 tagtttgtattattatttatttgaaattttaactccacatgtacctaaagtctggatcc 921  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  7607393 tagtttgtattattatttatttgaaattttagctccacatgtacctaaagtctggatcc 7607451  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 7607451 - 7607393
Alignment:
Q  54 ggatccagactttaggtacatgtggagttaaaatttcaaataaataataatacaaacta 112  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7607451 ggatccagactttaggtacatgtggagctaaaatttcaaataaataataatacaaacta 7607393  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 110
Target Start/End: Original strand, 26459614 - 26459673
Alignment:
Q  51 gacggatccagactttaggtacatgtggagttaaaatttcaaataaataataatacaaac 110  Q
    |||||||| ||||||||||||||||| ||| |||||||||||| ||| ||| || |||||    
T  26459614 gacggatcgagactttaggtacatgttgagctaaaatttcaaagaaacaattatgcaaac 26459673  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 865 - 924
Target Start/End: Complemental strand, 26459673 - 26459614
Alignment:
Q  865 gtttgtattattatttatttgaaattttaactccacatgtacctaaagtctggatccgtc 924  Q
    ||||| || ||| ||| |||||||||||| ||| ||||||||||||||||| ||||||||    
T  26459673 gtttgcataattgtttctttgaaattttagctcaacatgtacctaaagtctcgatccgtc 26459614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 36744858 - 36744920
Alignment:
Q  51 gacggatccagactttaggtacatgtggag-ttaaaatttcaaataaataataatacaaacta 112  Q
    ||||||| |||||||||||||||||||||| | ||||||| ||| ||| |||||| |||||||    
T  36744858 gacggattcagactttaggtacatgtggagctaaaaattttaaagaaacaataatgcaaacta 36744920  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 863 - 924
Target Start/End: Complemental strand, 36744920 - 36744858
Alignment:
Q  863 tagtttgtattattatttatttgaaattttaa-ctccacatgtacctaaagtctggatccgtc 924  Q
    ||||||| |||||| ||| ||| ||||||| | |||||||||||||||||||||| |||||||    
T  36744920 tagtttgcattattgtttctttaaaatttttagctccacatgtacctaaagtctgaatccgtc 36744858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 1e-16; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 33704025 - 33704086
Alignment:
Q  51 gacggatccagactttaggtacatgtggagttaaaatttcaaataaataataatacaaacta 112  Q
    |||||||||||| |||||||| |||||| | |||||||||||||||||||||||||||||||    
T  33704025 gacggatccagaatttaggtatatgtgggggtaaaatttcaaataaataataatacaaacta 33704086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 863 - 924
Target Start/End: Complemental strand, 33704086 - 33704025
Alignment:
Q  863 tagtttgtattattatttatttgaaattttaactccacatgtacctaaagtctggatccgtc 924  Q
    ||||||||||||||||||||||||||||||| | |||||| |||||||| ||||||||||||    
T  33704086 tagtttgtattattatttatttgaaattttacccccacatatacctaaattctggatccgtc 33704025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 51 - 112
Target Start/End: Original strand, 35187961 - 35188022
Alignment:
Q  51 gacggatccagactttaggtacatgtggagttaaaatttcaaataaataataatacaaacta 112  Q
    |||||||||||||||||||| ||||||||| |||||||| ||||||||||||||| ||||||    
T  35187961 gacggatccagactttaggttcatgtggagctaaaattttaaataaataataatataaacta 35188022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 863 - 924
Target Start/End: Complemental strand, 35188022 - 35187961
Alignment:
Q  863 tagtttgtattattatttatttgaaattttaactccacatgtacctaaagtctggatccgtc 924  Q
    |||||| ||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||    
T  35188022 tagtttatattattatttatttaaaattttagctccacatgaacctaaagtctggatccgtc 35187961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 111
Target Start/End: Original strand, 21883171 - 21883230
Alignment:
Q  52 acggatccagactttaggtacatgtggagttaaaatttcaaataaataataatacaaact 111  Q
    ||||||||| | ||||||||||||||||  |||||||| |||||||||||||||||||||    
T  21883171 acggatccatattttaggtacatgtggaactaaaattttaaataaataataatacaaact 21883230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 864 - 923
Target Start/End: Complemental strand, 21883230 - 21883171
Alignment:
Q  864 agtttgtattattatttatttgaaattttaactccacatgtacctaaagtctggatccgt 923  Q
    ||||||||||||||||||||| ||||||||  |||||||||||||||| | |||||||||    
T  21883230 agtttgtattattatttatttaaaattttagttccacatgtacctaaaatatggatccgt 21883171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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