View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0373_low_3 (Length: 555)
Name: NF0373_low_3
Description: NF0373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0373_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 9 - 321
Target Start/End: Original strand, 364036 - 364348
Alignment:
| Q |
9 |
acgcagtacagtacatacacataaaaggaatctatatttgtttgtttctctctcttttttaaagtgtgaagaaaagaaaatggcaaagagcaatgaagaa |
108 |
Q |
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| T |
364036 |
acgcagtacaatacatacacataaaaggaatctatatttgtctgtttctctctttttttaaaagtgtgaagaaaagaaaatggcaaagagcaatgaagaa |
364135 |
T |
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| Q |
109 |
tcatcgaatctgaatgtgatgaacaaaccacctttgaagaagacaaagacacttccttccctcaatctcagagtttcagttactcctcccaatcccaatg |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
364136 |
tcatcgaatctgaatgtgatgaacaaaccacctttgaagaagacaaagacacttccttccctcaatctcagagtttctgttactcctcccaatcccaatg |
364235 |
T |
|
| Q |
209 |
acaacaatggaattggaggaacttcaactactaaaactgatttctcagaacaacaatggaactacccttctttccttggcattggcagcacctccagaaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
364236 |
acaacaatggaattggaggaacttcaactactaaaactgatttctcagaacaacaatggaactacccttctttccttggcattggcagcacctccagaaa |
364335 |
T |
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| Q |
309 |
aagaagacaacca |
321 |
Q |
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||||||||||||| |
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| T |
364336 |
aagaagacaacca |
364348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 386 - 555
Target Start/End: Original strand, 364413 - 364582
Alignment:
| Q |
386 |
acgaccacaacaaaaccacctcctcacttcttccacaaccttcctcttcctccatcaccaaacaacaacaacaacactctatctcctctcccatcttcta |
485 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
364413 |
acgaccacaacaaaaccacctcctcacttcttccacaaccttcctcttcctccatcaccaaacaacaacaacaacactctacctcctctcccatcttcta |
364512 |
T |
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| Q |
486 |
tcttgttagtttattacttttacactttttcagttttcactctattaacttataatgttcatacttcatt |
555 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
364513 |
tcttgttagtttattacttttacactttttcagttttcactctattaacttataatgttcatacttcatt |
364582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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