View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0373_low_4 (Length: 355)
Name: NF0373_low_4
Description: NF0373
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0373_low_4 |
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| [»] scaffold0655 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 77 - 279
Target Start/End: Original strand, 18276801 - 18277003
Alignment:
| Q |
77 |
ttttctttatcatgtagagaggattatagcatgtatttttgtcagttattgacctaagaatctaagatttctttgacgacagataggggttgtagtattc |
176 |
Q |
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| T |
18276801 |
ttttctttatcatgtagagaggattatagcatgcatttttgtcagttattgacctaagaatctaagatttctttgacgacagataggggttgtagtattc |
18276900 |
T |
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| Q |
177 |
tattcaatttaaaagccaataatacatgcattaatgcatacatttttcctttaaaagttctgatgcaacttttattatcacttagtcattttaaagttct |
276 |
Q |
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| T |
18276901 |
tattcaatttaaaagccaataatacatgcattaatgcatacatttttcctttaaaagttctgatgcaacttttattgtcacttagtcactttaaagtttt |
18277000 |
T |
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| Q |
277 |
gtg |
279 |
Q |
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||| |
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| T |
18277001 |
gtg |
18277003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 30 - 207
Target Start/End: Original strand, 18267065 - 18267245
Alignment:
| Q |
30 |
atacttgcacggagatcccatggaagaatccgttacc-atttgatgctttttctttatcatgtagagaggattatagcatgtatttttgtcagttattga |
128 |
Q |
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| T |
18267065 |
atacttgcgcagagatcctatggaagaatctgtcacccatttgatgctttttctttgtcatttagagaggattatagcatgtagttttgtcggttattga |
18267164 |
T |
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| Q |
129 |
cctaagaatctaagatttct--ttgacgacagataggggttgtagtattctattcaatttaaaagccaataatacatgcat |
207 |
Q |
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| T |
18267165 |
cctaaaaatctaatatttcttgtcaaagacagataaaggttgtagtatcctatccaatttaaatgctaacagtacatgcat |
18267245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 18276556 - 18276610
Alignment:
| Q |
30 |
atacttgcacggagatcccatggaagaatccgttaccatttgatgctttttcttt |
84 |
Q |
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| T |
18276556 |
atacttgcacggagatctcatggaagaatccgttaccatttgatgctttttcttt |
18276610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0655 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0655
Description:
Target: scaffold0655; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 30 - 146
Target Start/End: Complemental strand, 2275 - 2158
Alignment:
| Q |
30 |
atacttgcacggagatcccatggaagaatccgttacca-tttgatgctttttctttatcatgtagagaggattatagcatgtatttttgtcagttattga |
128 |
Q |
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|||||||||| ||||||| || |||||| || |||| ||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
2275 |
atacttgcacagagatcctgcggcagaatctgtcaccaatttgatgctttttctttgtcatgtagagagaattatagcatgtatttctgtcagttattga |
2176 |
T |
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| Q |
129 |
cctaagaatctaagattt |
146 |
Q |
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|||||||||||||||||| |
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| T |
2175 |
cctaagaatctaagattt |
2158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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