View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0374_high_20 (Length: 268)
Name: NF0374_high_20
Description: NF0374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0374_high_20 |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 8e-70; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 33 - 170
Target Start/End: Original strand, 36876388 - 36876525
Alignment:
| Q |
33 |
cagagagattaaagtagaaattaaccttctaaaagctcactaaccagcacgtggaaagctcacagttcataaaacaacgagtcattaatgtagaaattac |
132 |
Q |
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| T |
36876388 |
cagagagattaaagtagaaattaaccttctaaaagctcactaaccagcacgtggaaagatcacagttcataaaacaacgagtcattaatgtagaaattac |
36876487 |
T |
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| Q |
133 |
cagagaaattaaccttgcgaagttttgaaagcctttga |
170 |
Q |
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| T |
36876488 |
cagagaaattaaccttgcgaagttttgaaagcctttga |
36876525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 170
Target Start/End: Original strand, 33397389 - 33397448
Alignment:
| Q |
111 |
gagtcattaatgtagaaattaccagagaaattaaccttgcgaagttttgaaagcctttga |
170 |
Q |
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| T |
33397389 |
gagtcattaacgtagaaatgaccagagagattaaccttgcggagttttgaaagcttttga |
33397448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 170
Target Start/End: Complemental strand, 27004983 - 27004916
Alignment:
| Q |
103 |
aaaacaacgagtcattaatgtagaaattaccagagaaattaaccttgcgaagttttgaaagcctttga |
170 |
Q |
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| T |
27004983 |
aaaacaaagagtcattaaagtaggaatgaccagagagattaacattgcggagttttgaaagcttttga |
27004916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 166
Target Start/End: Complemental strand, 33708234 - 33708171
Alignment:
| Q |
103 |
aaaacaacgagtcattaatgtagaaattaccagagaaattaaccttgcgaagttttgaaagcct |
166 |
Q |
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| T |
33708234 |
aaaacaatgagtcatttacgtaggaattaccggagagattaaccttacggagttttgaaagcct |
33708171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 165
Target Start/End: Complemental strand, 33714100 - 33714038
Alignment:
| Q |
103 |
aaaacaacgagtcattaatgtagaaattaccagagaaattaaccttgcgaagttttgaaagcc |
165 |
Q |
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| T |
33714100 |
aaaacaacgagtcatttacataggaattaccagagagattaaccttacggagttctgaaagcc |
33714038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 93 - 170
Target Start/End: Complemental strand, 18723634 - 18723557
Alignment:
| Q |
93 |
cacagttcataaaacaacgagtcattaatgtagaaattaccagagaaattaaccttgcgaagttttgaaagcctttga |
170 |
Q |
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| T |
18723634 |
cacagttgaaaaaacaatgaatcattaatgtagatattaccagaaagattaactttgcggagttttgaaagcctttga |
18723557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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