View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0374_high_26 (Length: 243)

Name: NF0374_high_26
Description: NF0374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0374_high_26
NF0374_high_26
[»] chr7 (2 HSPs)
chr7 (1-239)||(30434199-30434431)
chr7 (157-221)||(12742646-12742710)
[»] scaffold1348 (1 HSPs)
scaffold1348 (157-221)||(1581-1645)
[»] scaffold0061 (1 HSPs)
scaffold0061 (157-221)||(4007-4071)
[»] chr3 (2 HSPs)
chr3 (157-221)||(17194594-17194658)
chr3 (157-221)||(15604846-15604911)
[»] chr1 (2 HSPs)
chr1 (1-94)||(52226891-52226984)
chr1 (22-68)||(47805425-47805471)
[»] chr5 (2 HSPs)
chr5 (1-68)||(19986674-19986741)
chr5 (175-221)||(16800299-16800345)
[»] chr8 (1 HSPs)
chr8 (157-221)||(24638833-24638897)


Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 30434199 - 30434431
Alignment:
Q  1 ttagcaacatggagcaaagctagttcagctttgaggtctttgagctgagccaatagatcagctttggtcttctgcctcaactcgtgaactttgatcctgg 100  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30434199 ttagcaacacggagcaaagctagttcagctttgaggtctttgagctgagccaatagatcagctttggtcttctgcctcaactcgtgaactttgatcctgg 30434298  T
Q  101 ccattgttgaattcacgaggttcttctgcggctgcggctgcgcctcttgaaccctgctaaaacatgttaaacatacatctcatacatgcgttaactaaac 200  Q
    |||||||||||||||||||||||||      ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30434299 ccattgttgaattcacgaggttctt------ctgcgactgcgcctcttgaaccctgctaaaacatgttaaacatacatctcatacatgcgttaactaaac 30434392  T
Q  201 atacatttcatgcatcacataaattaaattatgtagtat 239  Q
    |||||||||||||||||||||||||||||||||||||||    
T  30434393 atacatttcatgcatcacataaattaaattatgtagtat 30434431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 12742710 - 12742646
Alignment:
Q  157 ctaaaacatgttaaacatacatctcatacatgcgttaactaaacatacatttcatgcatcacata 221  Q
    |||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  12742710 ctaaaacaagttaagcatacatctcatacatgcgctaactaaacatacatttcatgcatcacata 12742646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1348 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold1348
Description:

Target: scaffold1348; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 1645 - 1581
Alignment:
Q  157 ctaaaacatgttaaacatacatctcatacatgcgttaactaaacatacatttcatgcatcacata 221  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1645 ctaaaacatgttaagcatacatctcatacatgcgctaactaaacatacatttcatgcatcacata 1581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 4007 - 4071
Alignment:
Q  157 ctaaaacatgttaaacatacatctcatacatgcgttaactaaacatacatttcatgcatcacata 221  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  4007 ctaaaacatgttaagcatacatctcatacatgcgctaactaaacatacatttcatgcatcacata 4071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 17194594 - 17194658
Alignment:
Q  157 ctaaaacatgttaaacatacatctcatacatgcgttaactaaacatacatttcatgcatcacata 221  Q
    |||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17194594 ctaaaacaagttaagcatacatctcatacatgcgctaactaaacatacatttcatgcatcacata 17194658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 221
Target Start/End: Original strand, 15604846 - 15604911
Alignment:
Q  157 ctaaaacatgttaaa-catacatctcatacatgcgttaactaaacatacatttcatgcatcacata 221  Q
    |||||||||||| || ||||||||  ||||||||| ||| ||| ||||||||||||||||||||||    
T  15604846 ctaaaacatgtttaagcatacatcatatacatgcgctaaataatcatacatttcatgcatcacata 15604911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 52226984 - 52226891
Alignment:
Q  1 ttagcaacatggagcaaagctagttcagctttgaggtctttgagctgagccaatagatcagctttggtcttctgcctcaactcgtgaactttga 94  Q
    ||||||||  |||||||||  |||||||||||||| ||||||||||||||||| ||||||| |||| | |||||||||||||| ||||| ||||    
T  52226984 ttagcaactcggagcaaagaaagttcagctttgagatctttgagctgagccaacagatcagttttgtttttctgcctcaactcatgaaccttga 52226891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 47805471 - 47805425
Alignment:
Q  22 agttcagctttgaggtctttgagctgagccaatagatcagctttggt 68  Q
    |||||||| |||||||||||||| |||||||| ||||||| ||||||    
T  47805471 agttcagccttgaggtctttgagttgagccaacagatcagatttggt 47805425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 19986674 - 19986741
Alignment:
Q  1 ttagcaacatggagcaaagctagttcagctttgaggtctttgagctgagccaatagatcagctttggt 68  Q
    |||||||||  ||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||    
T  19986674 ttagcaacacagagcaaagcgagttcagccttgaggtctttgagctgagccaacagatcagctttggt 19986741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 175 - 221
Target Start/End: Original strand, 16800299 - 16800345
Alignment:
Q  175 acatctcatacatgcgttaactaaacatacatttcatgcatcacata 221  Q
    |||||| ||||||| |||| |||||||||||||||||||||||||||    
T  16800299 acatcttatacatgtgttagctaaacatacatttcatgcatcacata 16800345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 157 - 221
Target Start/End: Complemental strand, 24638897 - 24638833
Alignment:
Q  157 ctaaaacatgttaaacatacatctcatacatgcgttaactaaacatacatttcatgcatcacata 221  Q
    |||||||||||||| |||||||||||| |||| | |||||||||||||||| |||||||||||||    
T  24638897 ctaaaacatgttaagcatacatctcatgcatgtgctaactaaacatacattacatgcatcacata 24638833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1151 times since January 2019
Visitors: 3076