View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0374_high_29 (Length: 214)
Name: NF0374_high_29
Description: NF0374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0374_high_29 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 124; Significance: 6e-64; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 31 - 154
Target Start/End: Complemental strand, 6070606 - 6070483
Alignment:
| Q |
31 |
agcagagaggaaaataaaggaagagatgaatggagttgaaattcgagtggtgccacctggctattttgttactgctgattataacacccaaagagttcga |
130 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6070606 |
agcagagaggaaaataaaggaagagatgaatggagttgaaattcgagtggtgccacctggctattttgttactgctgattataacacccaaagagttcga |
6070507 |
T |
|
| Q |
131 |
ttgtatgttgatcaatctaataag |
154 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
6070506 |
ttgtatgttgatcaatctaataag |
6070483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 31 - 96
Target Start/End: Original strand, 6055812 - 6055877
Alignment:
| Q |
31 |
agcagagaggaaaataaaggaagagatgaatggagttgaaattcgagtggtgccacctggctattt |
96 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6055812 |
agcagagaggaaaataaaggaagagatgcatggagttgaaattcgagtggtgccacctggctattt |
6055877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 31 - 154
Target Start/End: Complemental strand, 6085682 - 6085559
Alignment:
| Q |
31 |
agcagagaggaaaataaaggaagagatgaatggagttgaaattcgagtggtgccacctggctattttgttactgctgattataacacccaaagagttcga |
130 |
Q |
| |
|
||||||||| |||||||||||||| || |||||||||||||| ||||||||| |||| | |||||||||||||||| | | | ||||||||| |
|
|
| T |
6085682 |
agcagagagaaaaataaaggaagatatatctggagttgaaattcaagtggtgccccctgattcatttgttactgctgatttcaggttcaagagagttcga |
6085583 |
T |
|
| Q |
131 |
ttgtatgttgatcaatctaataag |
154 |
Q |
| |
|
|||||||||||| ||||||||||| |
|
|
| T |
6085582 |
ttgtatgttgatgaatctaataag |
6085559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 154
Target Start/End: Original strand, 6055888 - 6055920
Alignment:
| Q |
122 |
agagttcgattgtatgttgatcaatctaataag |
154 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
6055888 |
agagttcgattgtatgttgatcaatctaataag |
6055920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1608 times since January 2019
Visitors: 3090