View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0374_high_6 (Length: 469)
Name: NF0374_high_6
Description: NF0374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0374_high_6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 74 - 469
Target Start/End: Complemental strand, 39298244 - 39297845
Alignment:
| Q |
74 |
agctgtgactgaaactgtgagtgatattggaaataacatggttaaagcaacagataatagtaaagttaatctttctcaagagggacaaggtggtggtgtt |
173 |
Q |
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| T |
39298244 |
agctgtgactgaaactgtgagtgatattggaaataacatggttaaagcaacagataatagtaaagttaatatttctcaagagggacaaggtggtggtgtt |
39298145 |
T |
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| Q |
174 |
ttggatgctattggtgaaaccatagctgaaattgcacatacaactaaagtcattgttgttggtgaggatgatgaagtagtacatgagtcaaggaagaata |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
39298144 |
ttggatgctattggtgaaaccatagctgaaattgcacatacaactaaagtcattgttgttggtgaggatgatgaagtattagatgagtcaaggaagaata |
39298045 |
T |
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| Q |
274 |
ttgggtcagagtctcactcaagtggtcgtgccaaacatgaaggccatccagcatcgaagaatgttttctaaattacatgg----atatgtttagtaatgt |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||| |
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| T |
39298044 |
ttgggtcagagtctcactcaagtggtcgtgccaaacatgaaggccatccagcatcaaagaatgttttctaaattccatggatatatatgtttagtaatgt |
39297945 |
T |
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| Q |
370 |
gttaagcttattagctgtaagtgcaagtccaatgttttgagttttcttttgtggagttgttgtgaataaattgcattctcttgagattgtccaaagtagt |
469 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
39297944 |
gttaagcttattagctgtaagtgcaagtccaatgttttgagttttcttttgtggagttgttgtgaataaattgcaatctcttgagattgtccaaagtagt |
39297845 |
T |
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