View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0374_high_9 (Length: 388)
Name: NF0374_high_9
Description: NF0374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0374_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 194 - 376
Target Start/End: Complemental strand, 35809518 - 35809336
Alignment:
| Q |
194 |
ccacttgtaattccaagtaacgaagaagaaacatttcacgaatgccagtgacccgagcagcttcttccatatcagaaggtaatttaacgccacgagcttc |
293 |
Q |
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| T |
35809518 |
ccacttgtaattccaagtaacgaagaagaaacatttcacgaatgccagtgacccgagcagcttcttccatatcagaaggtaatttaacaccacgagcttc |
35809419 |
T |
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| Q |
294 |
agcttctttcattacagcttcaaaattcaacaatggtccaaactcttcatcaccatcttcttcttctcctcctccatcatctc |
376 |
Q |
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| T |
35809418 |
agcttctttcattacagcttcaaaattcaacaatggtccaaactcttcatcaccatcttcttcttctcctcctccatcatctc |
35809336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 29 - 103
Target Start/End: Complemental strand, 35809685 - 35809611
Alignment:
| Q |
29 |
aggatccgccaacattcgatttctcaacatagaacaattcttcatcagaaaagacaatggccaagcagaacccta |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35809685 |
aggatccgccaacattcgatttctcaacatagaacaattcttcatcagaaaagacaatggccaagcagaacccta |
35809611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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