View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0374_low_1 (Length: 894)
Name: NF0374_low_1
Description: NF0374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0374_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 135 - 615
Target Start/End: Original strand, 45756907 - 45757388
Alignment:
| Q |
135 |
aatattcttttcgatggtacttttgtcaataatgtttggttcttctcacatgaagatttcaccttattagatattcgcattttgcgatcattattaactt |
234 |
Q |
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| T |
45756907 |
aatattcttttcgatggtacttttgtcaataatgtttggttcttctcacattaagatttcaccttattagatattcgcattttgccaccattattaactt |
45757006 |
T |
|
| Q |
235 |
attattactcttattcttttttcttctagatctttcgtatctactacaagtaacgtgctttttnnnnnnnnntggtaacataccactaattagagttcca |
334 |
Q |
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| T |
45757007 |
attattactcttattcttttttcttctagatctttcgtatctactacaagtaacgtgctttttaaaaaaaa-tggtaacataccactaattagagttcca |
45757105 |
T |
|
| Q |
335 |
atggatttttatacggcaaattgttgtattgaccaccttgataagttgttgacagtagattattactactagtgaatatagaacatcttaattaacatgc |
434 |
Q |
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| T |
45757106 |
atggatttttatacggcaaattgttgtattgaccaccttgataagttgttgacagtagattactactactagtgaatatagaacatc----ttaacatgc |
45757201 |
T |
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| Q |
435 |
ataatataatatgtttccattatgttttgggcgcatgcacatgcacatgcacatagaatgatgcttcctacctta------------ctatagtggaaga |
522 |
Q |
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| T |
45757202 |
ataatataatatgtttccattatgttttgggcg------catgcacatgcacatagaatgatgcttcctaccttacatcaatataagctatagtgggaga |
45757295 |
T |
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| Q |
523 |
tttatacggtcacattttatttcgtggaaagtgattgattcccaaactcaatttccttgtaacttacgaatgtttccaaaggcttcctttggt |
615 |
Q |
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| T |
45757296 |
tttatacggtcgcattttatttcgtggaaagtgattgattcccaaactcaatttccttgtaacttacgaatgtttccaaaggcttcctttggt |
45757388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 690 - 799
Target Start/End: Original strand, 45757464 - 45757573
Alignment:
| Q |
690 |
atttaagatttgaagtactctcgggttggtaagaatacgaaaatgcacaacgtacggtatgtttttgccccttaaagaaaccacaaactcacactatagg |
789 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||| |
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| T |
45757464 |
atttaagatttgaagtactctcgagttggtaagaatacgaaaatgcacaacgtacggtatttttttgccccttaaagaaaccacaaactcacactgtagg |
45757563 |
T |
|
| Q |
790 |
ttaggattcc |
799 |
Q |
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|||||||||| |
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| T |
45757564 |
ttaggattcc |
45757573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 45756812 - 45756869
Alignment:
| Q |
82 |
caaaggacaaaatggtactaacaaacttaaattttgggaaaacatttgctatgaatat |
139 |
Q |
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| T |
45756812 |
caaaggacaaaatggtactaacaaacttaaattttgggaaaacatttgctatgaatat |
45756869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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