View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0374_low_12 (Length: 387)
Name: NF0374_low_12
Description: NF0374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0374_low_12 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 87 - 387
Target Start/End: Complemental strand, 26998490 - 26998186
Alignment:
| Q |
87 |
caaaaatttattttagaatcgaactcaaattctttcaagcgagacgtcttttaatagaacttattaac----cacttgaatccaatcacttgattaattg |
182 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
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| T |
26998490 |
caaaaatttattttagaatcgaactcaaattctttcaagtgagatgtcttttaaaagaacttattaactaaccacttgaatccaatcacttgattaattg |
26998391 |
T |
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| Q |
183 |
ataaatgaatatgagacataatattttgatccaccttttgtaaggaattcacgatggatcgcgtacatcaaaagtaaactaaagtcaaactaaatgacct |
282 |
Q |
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| T |
26998390 |
ataaatgagtatgagacataatattttgatccaccttttataaggaattcgtgatggtccgcgtacatc-aaagtaaactaaagtcaaactaaatgacct |
26998292 |
T |
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| Q |
283 |
tttcttataaaagcacgttcatca-tacaaacttcccttgagatttttatttgttaaaaggagcaatatggaggagtttgaattatttccttttctagat |
381 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
26998291 |
tttcttataaaagcacgttcatcattacaaacttcccttgagatttttatttgttaaaaggagcaatatagaggagtttgaattatttccttttctagat |
26998192 |
T |
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| Q |
382 |
atgaat |
387 |
Q |
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|||||| |
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| T |
26998191 |
atgaat |
26998186 |
T |
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