View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0374_low_13 (Length: 379)
Name: NF0374_low_13
Description: NF0374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0374_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 62 - 369
Target Start/End: Original strand, 7732745 - 7733057
Alignment:
| Q |
62 |
aaaatagattaaataatggatgagattatacattttcttcgcatattcatttctataaaaaggaacccttcacatacattaaacactcatccattaccaa |
161 |
Q |
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|||| ||||||||||||| || |||||||||||||||| | ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7732745 |
aaaaaagattaaataatgtatcagattatacattttctacacatattcatttctttaaaaaggaacccttcacagacattaaacactcatccattaccaa |
7732844 |
T |
|
| Q |
162 |
tagcattgaactcacaatggcttctttttctacacttttctcctctctaactctcacaatagcccttctctcattttcttgctcatcacaacagttcttc |
261 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7732845 |
tagcattgaactcaccatggcttctttttctacacttttctccactctaattctcacaatagcccttctctcattttcttgctcatcacaacagttcttc |
7732944 |
T |
|
| Q |
262 |
tcaccaattgaaaaagactcattaaccaaactatactccactttactttgggtaggaacagaacctacacatgaattca-----gtgattgatattggag |
356 |
Q |
| |
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|||||| ||||||||||| || ||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7732945 |
tcaccagttgaaaaagacccaataaccaatctattctccacattactttgggtaggaacagaacctacacatgaattcaattttgtgattgatattggag |
7733044 |
T |
|
| Q |
357 |
gaccaatcctatg |
369 |
Q |
| |
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||||||||||||| |
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| T |
7733045 |
gaccaatcctatg |
7733057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 84 - 369
Target Start/End: Original strand, 7725357 - 7725647
Alignment:
| Q |
84 |
agattatacattttcttcgcatattcatttctataaaaaggaacccttcacatacattaaacactcatccattaccaatagcattgaactcacaatggct |
183 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
7725357 |
agattatacattttcttcacatattcatttctataaaaaggaacccttcacatacattaatcactcatccattagcaatagcattgaactcacaatggct |
7725456 |
T |
|
| Q |
184 |
tctttttctacacttttctcctctctaactctcacaatagcccttctctcattttcttgctcatcacaacagttcttctcaccaattgaaaaagactcat |
283 |
Q |
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|||||| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
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| T |
7725457 |
tcttttgctacacttttctcctctctaattctcacagtagcccttctctcattttcttgctcatcacaacagttcttctcaccagttgaaaaagacccaa |
7725556 |
T |
|
| Q |
284 |
taaccaaactatactccactttactttgggtaggaacagaacctacacatgaattca-----gtgattgatattggaggaccaatcctatg |
369 |
Q |
| |
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||||||| ||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
7725557 |
taaccaatctatactccactttactttgggtaggatcattacctacacatgaattcaattttgtgattgatattggaggaccaatcctatg |
7725647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 62 - 369
Target Start/End: Original strand, 7710434 - 7710747
Alignment:
| Q |
62 |
aaaatagattaaataatggatgagattatacattttcttcgcatattcatttctataaaaaggaa-cccttcacatacattaaacactcatccattacca |
160 |
Q |
| |
|
|||| ||||||||||||| || |||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||| ||||||||||||| | |
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| T |
7710434 |
aaaaaagattaaataatgtatcagattatacattttcttcatttattcatttctatataaaggaagcccttcacatacattaatcactcatccattagcc |
7710533 |
T |
|
| Q |
161 |
atagcattgaactcacaatggcttctttttctacacttttctcctctctaactctcacaatagcccttctctcattttcttgctcatcacaacagttctt |
260 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7710534 |
atagcattgaactcaccatggcttctttttctacacttttctccactctaattctcacaatagcccttctctcattttcttgctcatcacaacagttctt |
7710633 |
T |
|
| Q |
261 |
ctcaccaattgaaaaagactcattaaccaaactatactccactttactttgggtaggaacagaacctacacatgaattca-----gtgattgatattgga |
355 |
Q |
| |
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||||||| ||||||||||| || ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
7710634 |
ctcaccagttgaaaaagacccaataaccaatctattctccactttactttgggtaggaacagaacctacacatgaattcaattttgtgattgatattgga |
7710733 |
T |
|
| Q |
356 |
ggaccaatcctatg |
369 |
Q |
| |
|
|||||||||||||| |
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|
| T |
7710734 |
ggaccaatcctatg |
7710747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 68 - 369
Target Start/End: Complemental strand, 7747154 - 7746848
Alignment:
| Q |
68 |
gattaaataatggatgagattatacattttcttcgcatattcatttctataaaaaggaacccttcacatacattaaacactcatccattaccaatagcat |
167 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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|
| T |
7747154 |
gattaaataatgtatgagattatacattttcttcacatatttatttctataaaaaggaacccttcacatacattaatcactcatccattagcaatagcat |
7747055 |
T |
|
| Q |
168 |
tgaactcacaatggcttctttttctacacttttctcctctctaactctcacaatagcccttctctcattttcttgctcatcacaacagttcttctcacca |
267 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
7747054 |
tgaactcacaatggcttcttttgttacacttttctcctccctaactctcacaatagtccttctctcattttcatgctcatcacaacagttcttctcacca |
7746955 |
T |
|
| Q |
268 |
attgaaaaagactcattaaccaaactatactccactttactttgggtaggaacagaacctacacatgaattca-----gtgattgatattggaggaccaa |
362 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||| |||| |||||||||||||||||||| |||||| |||||||||||||||||||||| |
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|
| T |
7746954 |
attgaaaaagactcattaaccaatctatattccacttcacttgatataggaacagaacctacacatcaattcaatcttgtgattgatattggaggaccaa |
7746855 |
T |
|
| Q |
363 |
tcctatg |
369 |
Q |
| |
|
|| |||| |
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|
| T |
7746854 |
tcttatg |
7746848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 104 - 290
Target Start/End: Original strand, 7698471 - 7698643
Alignment:
| Q |
104 |
atattcatttctataaaaaggaacccttca--catacattaaacactcatccattaccaatagcattgaactcacaatggcttctttttctacacttttc |
201 |
Q |
| |
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||||| |||||||||||||||||||||||| ||| ||||||||| |||| ||| | |||| |||||| ||||||||||||| | || |||||| |
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| T |
7698471 |
atattaatttctataaaaaggaacccttcagtcatgcattaaacattcatt--ttatc-----cattaaactcataatggcttcttttgcaactcttttc |
7698563 |
T |
|
| Q |
202 |
tcctctctaactctcacaatagcccttctctcattttcttgctcatcacaacagttcttctcaccaattgaaaaagactcattaaccaa |
290 |
Q |
| |
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||| ||| |||||||||||| |||||||||||||||| ||||||||| ||| ||| ||| |||||||||||| |||||||||| |
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|
| T |
7698564 |
tcc-ctc-----ctcacaatagccattctctcattttcttgttcatcacaa---ttcatcttacccattgaaaaagacccattaaccaa |
7698643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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