View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0374_low_14 (Length: 350)
Name: NF0374_low_14
Description: NF0374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0374_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 3 - 258
Target Start/End: Original strand, 37231932 - 37232186
Alignment:
| Q |
3 |
aggaggagcagagattgtgattgaaggggttgaaaaagtggcagaagtagtagaaaaagttgcaaccgtagcagagaaggtaagtgaggatttagcagag |
102 |
Q |
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| T |
37231932 |
aggagaagcagagattgtgattgaaggggttgaaaaagtggcagaagtagtagaaaaagttgcaaccgtagcagagaaggtaagtgaggatttagcagag |
37232031 |
T |
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| Q |
103 |
atgcttcctgaggatgctaagctaaagaaagtagcggtggttgttgaaagtgcatcaaaacaagctgttcatggtgctcaaataacagaagaattcatac |
202 |
Q |
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| T |
37232032 |
acgcttcctgaggatgctaagctaaagaaagtagcggtggttgtagaaagtgcatcaaaacaagctgttcatggtgctcaaataacagaagaattcatac |
37232131 |
T |
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| Q |
203 |
acaaggtacttacttcttactctattattatcactatttaacatttaccactaatt |
258 |
Q |
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| T |
37232132 |
acaaggtacttacttcttactctattattatcacta-ttaacatttaccactaatt |
37232186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 37240103 - 37240164
Alignment:
| Q |
147 |
tgaaagtgcatcaaaacaagctgttcatggtgctcaaataacagaagaattcatacacaagg |
208 |
Q |
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| T |
37240103 |
tgaaagtgcatcaaaacatgttgttcatggtgcataactaacagtagaattcacacacaagg |
37240164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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