View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0374_low_15 (Length: 350)
Name: NF0374_low_15
Description: NF0374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0374_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 9e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 72 - 258
Target Start/End: Original strand, 37232001 - 37232186
Alignment:
| Q |
72 |
agcagagaaggtaagtgaggatttagcagagatgcttcctgaggatgctaagctaaagaaagtagcggtggttgttgaaagtgcatcaaaacaagctgtt |
171 |
Q |
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| T |
37232001 |
agcagagaaggtaagtgaggatttagcagagacgcttcctgaggatgctaagctaaagaaagtagcggtggttgtagaaagtgcatcaaaacaagctgtt |
37232100 |
T |
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| Q |
172 |
catggtgctcaaataacagaagaattcatacacaaggtacttacttcttactctattattatcactatttaacatttaccactaatt |
258 |
Q |
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| T |
37232101 |
catggtgctcaaataacagaagaattcatacacaaggtacttacttcttactctattattatcacta-ttaacatttaccactaatt |
37232186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 37240103 - 37240164
Alignment:
| Q |
147 |
tgaaagtgcatcaaaacaagctgttcatggtgctcaaataacagaagaattcatacacaagg |
208 |
Q |
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|||||||||||||||||| | |||||||||||| || |||||| |||||||| |||||||| |
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| T |
37240103 |
tgaaagtgcatcaaaacatgttgttcatggtgcataactaacagtagaattcacacacaagg |
37240164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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