View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0374_low_17 (Length: 337)
Name: NF0374_low_17
Description: NF0374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0374_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 30 - 316
Target Start/End: Original strand, 2761403 - 2761689
Alignment:
| Q |
30 |
ataaggatacgaaataccacacatttcaaatacaaaatgtaacaatctgtttcttccccaaactttttagatatgtcgtcaacaccaccatctttctctt |
129 |
Q |
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| T |
2761403 |
ataaggatacgaaataccacacatttcaaatacaaaatgtaacaatctgtttcttgcccaaactttttagatatgtcgtcaacaccaacatctttctctt |
2761502 |
T |
|
| Q |
130 |
ttcctgcaccctcaacactataatcattcagagttgcaacaataaggagaatcaaaattagtgaagcagtgatggttttggccattgtgtaagtaagagt |
229 |
Q |
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| T |
2761503 |
ttcctgcaccttcaacactataatcattcagagttgcaacaataaggagaatcaaaattagtgaagcagtgatggttttggccattgtgtaagtaagagt |
2761602 |
T |
|
| Q |
230 |
atttgcatggaataaattggctacaaatcattccaatttatagaacttgtgatttccttgaatgataagtgaacgtgttgaatttgg |
316 |
Q |
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| T |
2761603 |
atttgcatggaataaattggctacaaataattccaatttatagaacttgtgatttccttgaatgataagtgaacgtattgaatttgg |
2761689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 231 - 302
Target Start/End: Original strand, 11952570 - 11952641
Alignment:
| Q |
231 |
tttgcatggaataaattggctacaaatcattccaatttatagaacttgtgatttccttgaatgataagtgaa |
302 |
Q |
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| T |
11952570 |
tttgcatggaataaaagggctctaaattagtctaatttatagaactagtgatttccttaaatgagaagtgaa |
11952641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 214
Target Start/End: Original strand, 41814414 - 41814495
Alignment:
| Q |
133 |
ctgcaccctcaacactataatcattcagagttgcaacaataaggagaatcaaaattagtgaagcagtgatggttttggccat |
214 |
Q |
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||||||||||||||||| ||||||| | | |||| |||| |||||||| ||||| | ||||| ||||||| |||| ||||| |
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| T |
41814414 |
ctgcaccctcaacactacaatcattgataattgccacaacaaggagaactaaaatcaatgaagtagtgatgatttttgccat |
41814495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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