View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0374_low_2 (Length: 752)
Name: NF0374_low_2
Description: NF0374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0374_low_2 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 469; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 82 - 586
Target Start/End: Original strand, 45935969 - 45936473
Alignment:
| Q |
82 |
cactcgtaatttttatatcattaaaagcatgtaactttaacgataactacttctaaactcgtacatatgattgattgtgaatttttgatagtgtaaattt |
181 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
45935969 |
cactcgtaatttttatatcattaaaaccatttaactttaacgataactacttctaaactcgtacatatgattgattgtgaattgttgatagtgtaaattt |
45936068 |
T |
|
| Q |
182 |
tcctctattcactgattccatatttttccaatgtaggaaggaaccgaaagttttcagtttgaagagaacatgaaattttgcgaattcagattatttcctt |
281 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
45936069 |
tcctctactcactgattccatatttttccaatgtaggaaggaaccgaaagttttcggtttgaagagaacatgaaattttgcgaattctgattatttcctt |
45936168 |
T |
|
| Q |
282 |
tccctgttagctcaattttacagacttggaacatagaacaggaatagaaaattcaaatacaaaatctaggcaatggctaaaacagcatttttattttaca |
381 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45936169 |
tccctgttagctcaattttacagacttggaacatagaacaggaatggaaaattcaaatacaaaatctaggcaatggctaaaacagcatttttattttaca |
45936268 |
T |
|
| Q |
382 |
ttttgaattgacaaatttatgtcagcattgtatatgtatcatatgagtatagattcacaaagcatgtgatgagatatatgttgtgggagaaggtgaaaca |
481 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45936269 |
ttttgaaatgacatatttatgtcagcattgtatatgtatcatatgagtatagattcacaaagcatgtgatgagatatatgttgtgggagaaggtgaaaca |
45936368 |
T |
|
| Q |
482 |
ctcaacacaatcagtgaaaagtgtggtgacccgtttattgtagagaggaatccacatatccatgatccagatgatgttttccctggtcttgttatcagaa |
581 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45936369 |
ctcaacacaatcagtgaaaagtgtggtgacccgtttattgtagagaggaatccacatatccatgatccagatgatgttttccctggtcttgttatcagaa |
45936468 |
T |
|
| Q |
582 |
ttatc |
586 |
Q |
| |
|
||||| |
|
|
| T |
45936469 |
ttatc |
45936473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 2e-79
Query Start/End: Original strand, 436 - 586
Target Start/End: Original strand, 45924375 - 45924525
Alignment:
| Q |
436 |
tcacaaagcatgtgatgagatatatgttgtgggagaaggtgaaacactcaacacaatcagtgaaaagtgtggtgacccgtttattgtagagaggaatcca |
535 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45924375 |
tcacaaagcatgtgatgagatatatgttgtgggagaaggtgaaacactcaacacaatcagtgaaaagtgtggtgacccgtttattgtagagaggaatcca |
45924474 |
T |
|
| Q |
536 |
catatccatgatccagatgatgttttccctggtcttgttatcagaattatc |
586 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45924475 |
catatccatgatccagatgatgttttccctggtcttgttatcagaattatc |
45924525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 446 - 584
Target Start/End: Original strand, 26303197 - 26303335
Alignment:
| Q |
446 |
tgtgatgagatatatgttgtgggagaaggtgaaacactcaacacaatcagtgaaaagtgtggtgacccgtttattgtagagaggaatccacatatccatg |
545 |
Q |
| |
|
|||||||||||||| ||||| || || || || ||||| | ||||| ||||||||||||||||| || | |||||| || |||||||||||| |||| |
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|
| T |
26303197 |
tgtgatgagatatacgttgttggcgagggagagacacttcaaacaataagtgaaaagtgtggtgatccttatattgttgaagagaatccacatattcatg |
26303296 |
T |
|
| Q |
546 |
atccagatgatgttttccctggtcttgttatcagaatta |
584 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||| ||||| |
|
|
| T |
26303297 |
atcctgatgatgttttccctggccttgttatcaaaatta |
26303335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 90 - 433
Target Start/End: Original strand, 15818012 - 15818339
Alignment:
| Q |
90 |
atttttatatcattaaaagcatgtaactttaacgataactacttctaaactcgtacatatgattgattgtgaatttttgatagtgtaaattttcctctat |
189 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
15818012 |
atttttatatcattaaaaccatttaactttaacgataacgtcttctaaactcgtacatatgattgattgt----------------aaattttcctctac |
15818095 |
T |
|
| Q |
190 |
tcactgattccatatttttccaatgtaggaaggaaccgaaagttttcagtttgaagagaacatgaaattttgcgaattcagattatttcctttccctgtt |
289 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||| ||||| |||||||||||||| |
|
|
| T |
15818096 |
tcactgattccctatttttccaatgtaggaaggaaccggaagttttcggtttgaagagaacatgaaattttgggaattctgattacttcctttccctgtt |
15818195 |
T |
|
| Q |
290 |
agctcaattttacagacttggaacatagaacaggaatagaaaattcaaatacaaaatctaggcaatggctaaaacagcatttttattttacattttgaat |
389 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15818196 |
agctcaattttactgacttagaacatagaacaggaatggaaaattcaaatacaaaatctaggcaatggctaaaacagcatttttattttacattttgaaa |
15818295 |
T |
|
| Q |
390 |
tgacaaatttatgtcagcattgtatatgtatcatatgagtatag |
433 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15818296 |
tgacatatttatgtcagcattgtatatgtatcatatgagtatag |
15818339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 132; E-Value: 4e-68
Query Start/End: Original strand, 250 - 433
Target Start/End: Original strand, 15831266 - 15831448
Alignment:
| Q |
250 |
catgaaattttgcgaattcagattatttcctttccctgttagctcaattttacagacttggaacatagaacaggaatagaaaattcaaatacaaaatcta |
349 |
Q |
| |
|
|||||| ||||| |||||| ||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||| || ||||||||||||||||||| |
|
|
| T |
15831266 |
catgaatttttgggaattctgattatttcctttccctgttagctcaattttactgacttagaacgtagaacaggaatggataattcaaatacaaaatcta |
15831365 |
T |
|
| Q |
350 |
ggcaatggctaaaacagcatttttattttacattttgaattgacaaatttatgtcagcattgtatatgtatcatatgagtatag |
433 |
Q |
| |
|
|||||||||| |||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15831366 |
ggcaatggct-aaacagcatttttatttttcattttgaaatgacatatttatgtcagcattgtatatgtatcatatgagtatag |
15831448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 7 - 87
Target Start/End: Original strand, 6070483 - 6070563
Alignment:
| Q |
7 |
cttattagattgatcaacatacaatcgaactctttgggtgttataatcagcagtaacaaaatagccaggtggcaccactcg |
87 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6070483 |
cttattagattgatcaacatacaatcgaactctttgggtgttataatcagcagtaacaaaatagccaggtggcaccactcg |
6070563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 7 - 39
Target Start/End: Complemental strand, 6055920 - 6055888
Alignment:
| Q |
7 |
cttattagattgatcaacatacaatcgaactct |
39 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
6055920 |
cttattagattgatcaacatacaatcgaactct |
6055888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 5e-27; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 179 - 358
Target Start/End: Original strand, 5186340 - 5186523
Alignment:
| Q |
179 |
ttttcctctattcactgattccatattttt----ccaatgtaggaaggaaccgaaagttttcagtttgaagagaacatgaaattttgcgaattcagatta |
274 |
Q |
| |
|
||||||||| ||||||||||||| ||||| || ||||| | | ||| |||||||||||||||||||||||| | ||| ||| | || ||| |
|
|
| T |
5186340 |
ttttcctctcctcactgattccattttttttcttccgatgtaagcatgaatcgaaagttttcagtttgaagagaataagaattttggggagttctctgat |
5186439 |
T |
|
| Q |
275 |
tttcctttccctgttagctcaattttacagacttggaacatagaacaggaatagaaaattcaaatacaaaatctaggcaatggc |
358 |
Q |
| |
|
||||||| ||||||||||||||||| || ||||| |||||||||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5186440 |
tttccttaccctgttagctcaatttcactgacttagaacatagaagaggaatggaaaattcaaatacaaaatctaggcaatggc |
5186523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 310 - 372
Target Start/End: Original strand, 5164621 - 5164683
Alignment:
| Q |
310 |
gaacatagaacaggaatagaaaattcaaatacaaaatctaggcaatggctaaaacagcatttt |
372 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5164621 |
gaacatagaacaggaatggaaaattcaaatacaaaatttaggcaatggctaaaacagcatttt |
5164683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 179 - 295
Target Start/End: Original strand, 5191949 - 5192064
Alignment:
| Q |
179 |
ttttcctctattcactgattccatatttt-tccaatgtaggaaggaaccgaaagttttcagtttgaagagaacatgaaattttgcgaattcagattattt |
277 |
Q |
| |
|
||||||||| ||||||||||| |||||| ||| ||||||||||| ||||||||||||||||||||||||||| ||| ||||| || ||| ||| ||| |
|
|
| T |
5191949 |
ttttcctctcctcactgattccttattttgtccgatgtaggaaggtcccgaaagttttcagtttgaagagaacaagaatttttgggagttctgat--ttt |
5192046 |
T |
|
| Q |
278 |
cctttccctgttagctca |
295 |
Q |
| |
|
||||||||| |||||||| |
|
|
| T |
5192047 |
cctttccctattagctca |
5192064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 179 - 252
Target Start/End: Original strand, 5164552 - 5164626
Alignment:
| Q |
179 |
ttttcctctattcactgattccatat-ttttccaatgtaggaaggaaccgaaagttttcagtttgaagagaacat |
252 |
Q |
| |
|
||||||||| ||||||||||| ||| |||| ||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
5164552 |
ttttcctctcctcactgattccttatatttttcaatgtaggcaggaaccgaaagttttcagtttgatgagaacat |
5164626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 320 - 372
Target Start/End: Original strand, 5192063 - 5192115
Alignment:
| Q |
320 |
caggaatagaaaattcaaatacaaaatctaggcaatggctaaaacagcatttt |
372 |
Q |
| |
|
||||||| ||||||||| ||| ||||||||||||||||||||||||||||||| |
|
|
| T |
5192063 |
caggaatggaaaattcatataaaaaatctaggcaatggctaaaacagcatttt |
5192115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 5164381 - 5164446
Alignment:
| Q |
96 |
atatcattaaaagcatgtaactttaacgataactacttctaaactcgtacatatgattgattgtga |
161 |
Q |
| |
|
|||||||| ||| ||| |||||| || |||||||||||||||| | |||||||| ||| ||||||| |
|
|
| T |
5164381 |
atatcattgaaatcatttaacttcaatgataactacttctaaagttgtacatataattaattgtga |
5164446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 5e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 438 - 578
Target Start/End: Complemental strand, 42240290 - 42240150
Alignment:
| Q |
438 |
acaaagcatgtgatgagatatatgttgtgggagaaggtgaaacactcaacacaatcagtgaaaagtgtggtgacccgtttattgtagagaggaatccaca |
537 |
Q |
| |
|
||||||| ||||||||||||||||| || | ||||| || || || | ||||| |||||||| |||||||| || ||||||||||| ||||||||| |
|
|
| T |
42240290 |
acaaagcgtgtgatgagatatatgtggttcgtgaaggagagactcttcatacaataagtgaaaaatgtggtgatccatttattgtagaagagaatccaca |
42240191 |
T |
|
| Q |
538 |
tatccatgatccagatgatgttttccctggtcttgttatca |
578 |
Q |
| |
|
||| ||||| |||||||||||||| || ||||||||||||| |
|
|
| T |
42240190 |
tattcatgacccagatgatgtttttccaggtcttgttatca |
42240150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 470 - 578
Target Start/End: Complemental strand, 12631380 - 12631272
Alignment:
| Q |
470 |
gaaggtgaaacactcaacacaatcagtgaaaagtgtggtgacccgtttattgtagagaggaatccacatatccatgatccagatgatgttttccctggtc |
569 |
Q |
| |
|
|||||||| ||||| |||||||| ||||| |||||| ||| || |||||||| |||| ||||| ||||| ||||| || |||||||| |||||||||| |
|
|
| T |
12631380 |
gaaggtgagacacttaacacaattagtgataagtgtaatgatccttttattgttgagaataatcctcatattcatgaccctgatgatgtcttccctggtc |
12631281 |
T |
|
| Q |
570 |
ttgttatca |
578 |
Q |
| |
|
||||||||| |
|
|
| T |
12631280 |
ttgttatca |
12631272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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