View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0374_low_21 (Length: 308)

Name: NF0374_low_21
Description: NF0374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0374_low_21
NF0374_low_21
[»] chr1 (4 HSPs)
chr1 (13-280)||(7900793-7901060)
chr1 (13-280)||(8004046-8004313)
chr1 (162-280)||(51518515-51518633)
chr1 (13-49)||(51518410-51518446)
[»] chr4 (1 HSPs)
chr4 (46-280)||(1300539-1300778)


Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 13 - 280
Target Start/End: Complemental strand, 7901060 - 7900793
Alignment:
Q  13 aaaatattaattgaattcacgatccattactgttctatttgtgatgatgttgtagcaagatttttagaactatatcactcagctttgttgcgtgtttgat 112  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  7901060 aaaatattaattgaattcacgattcattactgttctatttgtgatgatgttgtagcaagatttttagaactatatcactcagctttgttgtgtgtttgat 7900961  T
Q  113 tttgctactttagacatctattcattttaaactaaatagcatttatagttttctaatcagttgctattgttctacaacaacagcctgcagacatctatct 212  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  7900960 tttgctactttagacatctattcattttaaactaaatagtatttatagttttttaatcagttgctattgttctacaacaacagcctgcagacatctatct 7900861  T
Q  213 gatagatgagccaagtgcatatcttgattcggaacagcgtattgttgctgcaaaagtcattaagaggt 280  Q
    |||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||    
T  7900860 gatagatgagccaagtgcatatcttgattccgaacagcgtattgtagttgcaaaagtcattaagaggt 7900793  T

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Target: chr1; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 280
Target Start/End: Original strand, 8004046 - 8004313
Alignment:
Q  13 aaaatattaattgaattcacgatccattactgttctatttgtgatgatgttgtagcaagatttttagaactatatcactcagctttgttgcgtgtttgat 112  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||| |    
T  8004046 aaaatattaattgaattcacgattcattactgttctatttgtgatgatgttgtggcaagacttttggaactatatcactcagctttgttgcgtgtttgtt 8004145  T
Q  113 tttgctactttagacatctattcattttaaactaaatagcatttatagttttctaatcagttgctattgttctacaacaacagcctgcagacatctatct 212  Q
    ||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8004146 tttcctgctttagacatctattcattttaaactaaatagtatttatagttttctaatcagttgctattgttctacaacaacagcctgcagacatctatct 8004245  T
Q  213 gatagatgagccaagtgcatatcttgattcggaacagcgtattgttgctgcaaaagtcattaagaggt 280  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8004246 gatagatgagccaagtgcatatcttgattcagaacagcgtattgttgctgcaaaagtcattaagaggt 8004313  T

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Target: chr1; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 162 - 280
Target Start/End: Original strand, 51518515 - 51518633
Alignment:
Q  162 tttctaatcagttgctattgttctacaacaacagcctgcagacatctatctgatagatgagccaagtgcatatcttgattcggaacagcgtattgttgct 261  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  51518515 tttctaatcagttgctattgtcctacaacaacagcctgcagacatctatctgatagatgagccaagtgcatatcttgattccgaacagcgtattgttgct 51518614  T
Q  262 gcaaaagtcattaagaggt 280  Q
    ||||||||||| |||||||    
T  51518615 gcaaaagtcatcaagaggt 51518633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 49
Target Start/End: Original strand, 51518410 - 51518446
Alignment:
Q  13 aaaatattaattgaattcacgatccattactgttcta 49  Q
    ||||||||||||||||||||  |||||||||||||||    
T  51518410 aaaatattaattgaattcacattccattactgttcta 51518446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 46 - 280
Target Start/End: Complemental strand, 1300778 - 1300539
Alignment:
Q  46 tctatttgtgatgatgttgtagcaagatttttagaactatatcactcagctttgttgcgtgtttgattttgctactttagacat------ctattcattt 139  Q
    |||||||||| ||| ||  | |||||||||||||||||||||| ||  ||||||||| || |||| ||||||||||| |||  |      ||||| ||||    
T  1300778 tctatttgtgctgacgtcatggcaagatttttagaactatatctcttggctttgttgtgtctttg-ttttgctacttgagatgtgcactcctatttattt 1300680  T
Q  140 taaactaaatagcatttatagttttctaatcagttgctattgttctacaacaacagcctgcagacatctatctgatagatgagccaagtgcatatcttga 239  Q
     |||| |||||| ||||| ||||||||||||| ||||||| || |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  1300679 caaacgaaatagtatttacagttttctaatcaattgctatcgtcctaccacaacagcctgcagacatttatctgatagatgagccaagtgcatatcttga 1300580  T
Q  240 ttcggaacagcgtattgttgctgcaaaagtcattaagaggt 280  Q
    ||| |||||||||||| ||||||||||||| || |||||||    
T  1300579 ttccgaacagcgtattattgctgcaaaagttatcaagaggt 1300539  T

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