View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0374_low_28 (Length: 286)

Name: NF0374_low_28
Description: NF0374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0374_low_28
NF0374_low_28
[»] chr8 (2 HSPs)
chr8 (45-131)||(18789389-18789475)
chr8 (131-213)||(18789541-18789622)
[»] chr7 (5 HSPs)
chr7 (45-131)||(10924402-10924488)
chr7 (131-213)||(10924554-10924635)
chr7 (133-224)||(7560795-7560886)
chr7 (159-218)||(20095345-20095404)
chr7 (159-209)||(15757014-15757064)
[»] chr6 (3 HSPs)
chr6 (131-220)||(24576050-24576139)
chr6 (133-222)||(13487560-13487649)
chr6 (159-209)||(1559311-1559361)
[»] chr5 (2 HSPs)
chr5 (149-222)||(12859730-12859803)
chr5 (159-220)||(18282086-18282147)
[»] chr4 (2 HSPs)
chr4 (141-224)||(4746014-4746097)
chr4 (190-222)||(10220997-10221029)
[»] scaffold1149 (1 HSPs)
scaffold1149 (131-198)||(2505-2572)
[»] chr2 (1 HSPs)
chr2 (164-220)||(13112164-13112220)


Alignment Details
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 45 - 131
Target Start/End: Original strand, 18789389 - 18789475
Alignment:
Q  45 acatcatcacaacgaaaatcaaaggcaaagcaagcttcatgagtctgatagaaacaattttagaagaagacaaagctgacatgactt 131  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||| |||||||||||    
T  18789389 acatcatcaaaacaaaaatcaaaggcaaagcaagcttcatgagtctgatagagacaacttcagaagaagacaaagttgacatgactt 18789475  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 131 - 213
Target Start/End: Original strand, 18789541 - 18789622
Alignment:
Q  131 tctgatgcagatcttcagcttccctagtttccaaatgctcttgtatacattcttcgaggatcaaaacttgattttatactttg 213  Q
    |||||||||| | |||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||    
T  18789541 tctgatgcagtt-ttcagcttccctagtttccaaatgttcttgtatacattcttccaagatcaaaacttgattttatactttg 18789622  T

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Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 45 - 131
Target Start/End: Original strand, 10924402 - 10924488
Alignment:
Q  45 acatcatcacaacgaaaatcaaaggcaaagcaagcttcatgagtctgatagaaacaattttagaagaagacaaagctgacatgactt 131  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||| |||||||||||    
T  10924402 acatcatcaaaacaaaaatcaaaggcaaagcaagcttcatgagtctgatagagacaacttcagaagaagacaaagttgacatgactt 10924488  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 131 - 213
Target Start/End: Original strand, 10924554 - 10924635
Alignment:
Q  131 tctgatgcagatcttcagcttccctagtttccaaatgctcttgtatacattcttcgaggatcaaaacttgattttatactttg 213  Q
    |||||||||| | |||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||    
T  10924554 tctgatgcagtt-ttcagcttccctagtttccaaatgttcttgtatacattcttccaagatcaaaacttgattttatactttg 10924635  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 133 - 224
Target Start/End: Complemental strand, 7560886 - 7560795
Alignment:
Q  133 tgatgcagatcttcagcttccctagtttccaaatgctcttgtatacattcttcgaggatcaaaacttgattttatactttgaattttaatct 224  Q
    |||||||||||||||| ||| ||   |||||||||||||||||||  |||||| ||||| ||| |||||||||||||  |||||||||||||    
T  7560886 tgatgcagatcttcagtttctctttattccaaatgctcttgtatattttcttccaggattaaagcttgattttataccatgaattttaatct 7560795  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 218
Target Start/End: Original strand, 20095345 - 20095404
Alignment:
Q  159 ttccaaatgctcttgtatacattcttcgaggatcaaaacttgattttatactttgaattt 218  Q
    |||||| ||||||||||||| |||||| || | ||||||||||||||||||| |||||||    
T  20095345 ttccaattgctcttgtatacgttcttccagaaccaaaacttgattttatactatgaattt 20095404  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 15757064 - 15757014
Alignment:
Q  159 ttccaaatgctcttgtatacattcttcgaggatcaaaacttgattttatac 209  Q
    |||||| ||||| |||||| ||||||  |||||||||||||||||||||||    
T  15757064 ttccaagtgctcctgtatatattctttcaggatcaaaacttgattttatac 15757014  T

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Target: chr6 (Bit Score: 62; Significance: 8e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 131 - 220
Target Start/End: Original strand, 24576050 - 24576139
Alignment:
Q  131 tctgatgcagatcttcagcttccctagtttccaaatgctcttgtatacattcttcgaggatcaaaacttgattttatactttgaatttta 220  Q
    ||||||||||||||||||||| | |||||| |||||||| ||||||| ||||||| |||||||||||||||||||||||| |||||||||    
T  24576050 tctgatgcagatcttcagctttcttagttttcaaatgcttttgtatatattcttccaggatcaaaacttgattttatactatgaatttta 24576139  T

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Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 13487649 - 13487560
Alignment:
Q  133 tgatgcagatcttcagcttccctagtttccaaatgctcttgtatacattcttcgaggatcaaaacttgattttatactttgaattttaat 222  Q
    ||||||||||||||| ||||||| |||||||| || | ||||||| |||| ||  ||||||| |||||||| ||||||||||||||||||    
T  13487649 tgatgcagatcttcaacttcccttgtttccaactgttgttgtatatattcatcctggatcaagacttgattctatactttgaattttaat 13487560  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 1559311 - 1559361
Alignment:
Q  159 ttccaaatgctcttgtatacattcttcgaggatcaaaacttgattttatac 209  Q
    |||||| ||||| |||||| ||||||  |||||||||||||||||||||||    
T  1559311 ttccaagtgctcctgtatatattctttcaggatcaaaacttgattttatac 1559361  T

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Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 149 - 222
Target Start/End: Complemental strand, 12859803 - 12859730
Alignment:
Q  149 cttccctagtttccaaatgctcttgtatacattcttcgaggatcaaaacttgattttatactttgaattttaat 222  Q
    |||||||| |||| ||||||| ||||||| |||||||| |||||||||||||| || |||||||||||||||||    
T  12859803 cttccctaatttctaaatgcttttgtatatattcttcggggatcaaaacttgaattaatactttgaattttaat 12859730  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 220
Target Start/End: Original strand, 18282086 - 18282147
Alignment:
Q  159 ttccaaatgctcttgtatacattcttcgaggatcaaaacttgattttatactttgaatttta 220  Q
    |||||| ||||||||||  ||||||||||| | |||||||||||||||||| || |||||||    
T  18282086 ttccaattgctcttgtaatcattcttcgagaaccaaaacttgattttatacattaaatttta 18282147  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 141 - 224
Target Start/End: Complemental strand, 4746097 - 4746014
Alignment:
Q  141 atcttcagcttccctagtttccaaatgctcttgtatacattcttcgaggatcaaaacttgattttatactttgaattttaatct 224  Q
    |||||||| ||||||| ||| ||||| |||||||||| ||||||| | ||||||||||| |||||||||| || ||||||||||    
T  4746097 atcttcagtttccctattttgcaaatactcttgtatatattcttccaagatcaaaactttattttatactatggattttaatct 4746014  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 10221029 - 10220997
Alignment:
Q  190 atcaaaacttgattttatactttgaattttaat 222  Q
    ||||||||||||||| |||||||||||||||||    
T  10221029 atcaaaacttgatttaatactttgaattttaat 10220997  T

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Target: scaffold1149 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1149
Description:

Target: scaffold1149; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 2572 - 2505
Alignment:
Q  131 tctgatgcagatcttcagcttccctagtttccaaatgctcttgtatacattcttcgaggatcaaaact 198  Q
    |||||| | |||||| | |||||||||||||||| |||||||||||| |||||||  |||||||||||    
T  2572 tctgatactgatctttaacttccctagtttccaagtgctcttgtatatattcttcctggatcaaaact 2505  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 13112220 - 13112164
Alignment:
Q  164 aatgctcttgtatacattcttcgaggatcaaaacttgattttatactttgaatttta 220  Q
    ||||||||||||||  |||||| || | ||||||||||||| ||||||| |||||||    
T  13112220 aatgctcttgtatatgttcttctagaaccaaaacttgatttaatactttaaatttta 13112164  T

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