View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0374_low_3 (Length: 590)
Name: NF0374_low_3
Description: NF0374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0374_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 28 - 432
Target Start/End: Complemental strand, 39378589 - 39378185
Alignment:
| Q |
28 |
gttctattccttcttctccttcttctaatcctcaaggttcttctcctcctgcaatcgccgcaatgccgaagaattttgataatgattctcctcaatcacc |
127 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39378589 |
gttctattccttcttctccttcttctaatcctcaaggttcttctcctcctgcactcgccgcaatgccgaagaattttgataatgattctcctcaatcaca |
39378490 |
T |
|
| Q |
128 |
aacaacagagtcttcagagaagaaacagagtggtttgagaaaaggaactattataggaattgttattggtgatttcgttggaattggaatcttagctatg |
227 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39378489 |
aacaacagagtcttcagagaagaaacagagtggtttgagaaaaggaactattataggaattgttattggtgatttcgttggaattggaatcttagctatg |
39378390 |
T |
|
| Q |
228 |
gtttttgtttatgtttataagctaaagagnnnnnnngatgcggaaaatgcaataaaaaatgaagctgctactacaagaagtgagaattcttcttcaacct |
327 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
39378389 |
gtttttgtttatgtttataagctaaagagaaaaaaagatgcggaaaatgcaataaaaaatgaagttgctactgcaagaagtgagaattcttcatcaacct |
39378290 |
T |
|
| Q |
328 |
tagagacaaaagggtttacaaggtggtcttgtttaagaaaaagaacagaagatgaagaatcctcagagacacaaagttcttcagatagtgacgtggaaat |
427 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
39378289 |
tagagacaaaagggtttacaaggtggtcttgtttaagaaaaagaacagaagatgaagaatcctcggagacacaaagttcttcagatagtgacgtggaaat |
39378190 |
T |
|
| Q |
428 |
atcac |
432 |
Q |
| |
|
||||| |
|
|
| T |
39378189 |
atcac |
39378185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 467 - 581
Target Start/End: Complemental strand, 39378136 - 39378022
Alignment:
| Q |
467 |
gtacgggttcgggtacgggcactctggtcatagttgatggtgaaagagagcttgaagtggaaacacttttgaaagcttctgcgtatattttaggagctac |
566 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39378136 |
gtacgggttcgggtacaggcactctggtcatagttgatggtgaaagagagcttgaagtggaaacacttttgaaagcttctgcgtatattttaggagctac |
39378037 |
T |
|
| Q |
567 |
tggttcaagtataat |
581 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
39378036 |
tggttcaagtataat |
39378022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 715 times since January 2019
Visitors: 3064