View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0374_low_32 (Length: 280)

Name: NF0374_low_32
Description: NF0374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0374_low_32
NF0374_low_32
[»] chr4 (8 HSPs)
chr4 (43-227)||(2381241-2381425)
chr4 (46-167)||(2380046-2380167)
chr4 (43-229)||(2390873-2391053)
chr4 (49-163)||(2376161-2376275)
chr4 (114-154)||(2360929-2360969)
chr4 (43-89)||(2367678-2367724)
chr4 (50-100)||(2460615-2460665)
chr4 (41-99)||(2472101-2472159)
[»] chr1 (2 HSPs)
chr1 (43-96)||(9581945-9581998)
chr1 (43-100)||(15837954-15838011)
[»] chr5 (2 HSPs)
chr5 (44-84)||(32268782-32268822)
chr5 (46-90)||(17205970-17206014)
[»] chr8 (2 HSPs)
chr8 (43-125)||(39516868-39516950)
chr8 (43-80)||(32152217-32152254)
[»] chr7 (1 HSPs)
chr7 (44-90)||(15091356-15091402)


Alignment Details
Target: chr4 (Bit Score: 177; Significance: 2e-95; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 43 - 227
Target Start/End: Complemental strand, 2381425 - 2381241
Alignment:
Q  43 gagactgttggtgatcgagagtaactgtttggagacgatggaaagagacttgaaagtgcagtggtctccattgaggaatttgatgatgtattcccatagc 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  2381425 gagactgttggtgatcgagagtaactgtttggagacgatggaaagagacttgaaagtgcagtggtctccattgaggaatttgatgatgtattcccatagg 2381326  T
Q  143 tcatctggtaaacttgaacacgcttttgctgttgctgctgccgcggccattctttttggaaccttggatttggatgatgatgatg 227  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2381325 tcatctggtaaacttgaacacgcttttgctgttgctgctgccgctgccattctttttggaaccttggatttggatgatgatgatg 2381241  T

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Target: chr4; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 46 - 167
Target Start/End: Complemental strand, 2380167 - 2380046
Alignment:
Q  46 actgttggtgatcgagagtaactgtttggagacgatggaaagagacttgaaagtgcagtggtctccattgaggaatttgatgatgtattcccatagctca 145  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||  ||||||||||||||||||||||||| ||||    
T  2380167 actgtaggtgatcgagagtaactgtttggagacgatggaaagagacttgacagtacagtggtctccatcaaggaatttgatgatgtattcccataactca 2380068  T
Q  146 tctggtaaacttgaacacgctt 167  Q
    ||||||||| ||||||| ||||    
T  2380067 tctggtaaatttgaacatgctt 2380046  T

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Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 43 - 229
Target Start/End: Complemental strand, 2391053 - 2390873
Alignment:
Q  43 gagactgttggtgatcgagagtaactgtttggagacgatggaaagagacttgaaagtgcagtggtctccattgaggaatttgatgatgtattcccatagc 142  Q
    |||| |||||||||| |||||||| ||||| |||||||| |||||||||||||||||  |||||||| |||  ||||||||||||||||||||||| | |    
T  2391053 gagattgttggtgatggagagtaattgtttcgagacgatagaaagagacttgaaagtatagtggtcttcatcaaggaatttgatgatgtattcccacaac 2390954  T
Q  143 tcatctggtaaacttgaacacgcttttgctgttgctgctgccgcggccattctttttggaaccttggatttggatgatgatgatgtc 229  Q
    |||||||||||| |||||||| ||||||||||      | |||| |||||  |||||||||||||||||||||||||||||| ||||    
T  2390953 tcatctggtaaatttgaacactcttttgctgt------ttccgctgccatcgtttttggaaccttggatttggatgatgatgctgtc 2390873  T

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Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 163
Target Start/End: Complemental strand, 2376275 - 2376161
Alignment:
Q  49 gttggtgatcgagagtaactgtttggagacgatggaaagagacttgaaagtgcagtggtctccattgaggaatttgatgatgtattcccatagctcatct 148  Q
    ||||||||| ||||| ||   ||||||||||||||| |||||||| |||| |  || ||| ||   |||||||||||||||||||||||||| ||||| |    
T  2376275 gttggtgatggagagaaaagttttggagacgatggagagagacttcaaagaggggttgtcgccggcgaggaatttgatgatgtattcccataactcatat 2376176  T
Q  149 ggtaaacttgaacac 163  Q
    ||||||  |||||||    
T  2376175 ggtaaatatgaacac 2376161  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 2360969 - 2360929
Alignment:
Q  114 tgaggaatttgatgatgtattcccatagctcatctggtaaa 154  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  2360969 tgaggaatttgatgatgtgttcccatagctcatctggtaaa 2360929  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 89
Target Start/End: Complemental strand, 2367724 - 2367678
Alignment:
Q  43 gagactgttggtgatcgagagtaactgtttggagacgatggaaagag 89  Q
    ||||| ||||||||| ||||| || ||||||||||||||||||||||    
T  2367724 gagacggttggtgatggagagaaattgtttggagacgatggaaagag 2367678  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 50 - 100
Target Start/End: Original strand, 2460615 - 2460665
Alignment:
Q  50 ttggtgatcgagagtaactgtttggagacgatggaaagagacttgaaagtg 100  Q
    |||||||| ||||| |||||||||||||| ||||| ||||| |||||||||    
T  2460615 ttggtgatggagaggaactgtttggagaccatggagagagatttgaaagtg 2460665  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 2472101 - 2472159
Alignment:
Q  41 cagagactgttggtgatcgagagtaactgtttggagacgatggaaagagacttgaaagt 99  Q
    |||||||  |||||||| ||||  |||||||||||||| ||||||||||| ||||||||    
T  2472101 cagagacgattggtgatggagaaaaactgtttggagaccatggaaagagatttgaaagt 2472159  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 43 - 96
Target Start/End: Original strand, 9581945 - 9581998
Alignment:
Q  43 gagactgttggtgatcgagagtaactgtttggagacgatggaaagagacttgaa 96  Q
    ||||| ||||||||| ||||| ||||||||||||||||  ||||||||||||||    
T  9581945 gagaccgttggtgatagagagaaactgtttggagacgacagaaagagacttgaa 9581998  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 15838011 - 15837954
Alignment:
Q  43 gagactgttggtgatcgagagtaactgtttggagacgatggaaagagacttgaaagtg 100  Q
    ||||| ||||||||| ||||| |||||||||||||| || || || ||||||||||||    
T  15838011 gagacggttggtgatggagagaaactgtttggagaccatcgagagggacttgaaagtg 15837954  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 32268782 - 32268822
Alignment:
Q  44 agactgttggtgatcgagagtaactgtttggagacgatgga 84  Q
    |||| ||||||||| ||||||||||||||||||||||||||    
T  32268782 agacggttggtgatggagagtaactgtttggagacgatgga 32268822  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 90
Target Start/End: Original strand, 17205970 - 17206014
Alignment:
Q  46 actgttggtgatcgagagtaactgtttggagacgatggaaagaga 90  Q
    ||||| |||||| |||||||||||||||||||||| ||| |||||    
T  17205970 actgtcggtgatagagagtaactgtttggagacgagggatagaga 17206014  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 125
Target Start/End: Original strand, 39516868 - 39516950
Alignment:
Q  43 gagactgttggtgatcgagagtaactgtttggagacgatggaaagagacttgaaagtgcagtggtctccattgaggaatttga 125  Q
    ||||| ||||||||| | ||| || ||| ||||||||||||| |||||||||||||||  || ||| || | |||||||||||    
T  39516868 gagacggttggtgatggcgagaaattgtctggagacgatggagagagacttgaaagtgtggttgtcaccgtcgaggaatttga 39516950  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 32152217 - 32152254
Alignment:
Q  43 gagactgttggtgatcgagagtaactgtttggagacga 80  Q
    ||||||||||||||| ||||| ||||||||||||||||    
T  32152217 gagactgttggtgatggagaggaactgtttggagacga 32152254  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 90
Target Start/End: Complemental strand, 15091402 - 15091356
Alignment:
Q  44 agactgttggtgatcgagagtaactgtttggagacgatggaaagaga 90  Q
    |||||||||||||| ||||| |||||||||||||||| ||| |||||    
T  15091402 agactgttggtgatggagaggaactgtttggagacgagggagagaga 15091356  T

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