View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0374_low_38 (Length: 271)
Name: NF0374_low_38
Description: NF0374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0374_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 160; Significance: 2e-85; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 62 - 265
Target Start/End: Original strand, 7732745 - 7732948
Alignment:
| Q |
62 |
aaaatagattaaataatggatgagattatacattttcttcgcatattcatttctataaaaaggaacccttcacatacattaaacactcatccattaccaa |
161 |
Q |
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|||| ||||||||||||| || |||||||||||||||| | ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
7732745 |
aaaaaagattaaataatgtatcagattatacattttctacacatattcatttctttaaaaaggaacccttcacagacattaaacactcatccattaccaa |
7732844 |
T |
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| Q |
162 |
tagcattgaactcacaatggcttctttttctacacttttctcctctctaactctcacaatagcccttctctcattttcttgctcatcacaacagttcatc |
261 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
7732845 |
tagcattgaactcaccatggcttctttttctacacttttctccactctaattctcacaatagcccttctctcattttcttgctcatcacaacagttcttc |
7732944 |
T |
|
| Q |
262 |
tcac |
265 |
Q |
| |
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|||| |
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| T |
7732945 |
tcac |
7732948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 84 - 265
Target Start/End: Original strand, 7725357 - 7725538
Alignment:
| Q |
84 |
agattatacattttcttcgcatattcatttctataaaaaggaacccttcacatacattaaacactcatccattaccaatagcattgaactcacaatggct |
183 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
7725357 |
agattatacattttcttcacatattcatttctataaaaaggaacccttcacatacattaatcactcatccattagcaatagcattgaactcacaatggct |
7725456 |
T |
|
| Q |
184 |
tctttttctacacttttctcctctctaactctcacaatagcccttctctcattttcttgctcatcacaacagttcatctcac |
265 |
Q |
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|||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7725457 |
tcttttgctacacttttctcctctctaattctcacagtagcccttctctcattttcttgctcatcacaacagttcttctcac |
7725538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 68 - 265
Target Start/End: Complemental strand, 7747154 - 7746957
Alignment:
| Q |
68 |
gattaaataatggatgagattatacattttcttcgcatattcatttctataaaaaggaacccttcacatacattaaacactcatccattaccaatagcat |
167 |
Q |
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|||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
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| T |
7747154 |
gattaaataatgtatgagattatacattttcttcacatatttatttctataaaaaggaacccttcacatacattaatcactcatccattagcaatagcat |
7747055 |
T |
|
| Q |
168 |
tgaactcacaatggcttctttttctacacttttctcctctctaactctcacaatagcccttctctcattttcttgctcatcacaacagttcatctcac |
265 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||| |
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| T |
7747054 |
tgaactcacaatggcttcttttgttacacttttctcctccctaactctcacaatagtccttctctcattttcatgctcatcacaacagttcttctcac |
7746957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 62 - 265
Target Start/End: Original strand, 7710434 - 7710638
Alignment:
| Q |
62 |
aaaatagattaaataatggatgagattatacattttcttcgcatattcatttctataaaaaggaa-cccttcacatacattaaacactcatccattacca |
160 |
Q |
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|||| ||||||||||||| || |||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||| ||||||||||||| | |
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| T |
7710434 |
aaaaaagattaaataatgtatcagattatacattttcttcatttattcatttctatataaaggaagcccttcacatacattaatcactcatccattagcc |
7710533 |
T |
|
| Q |
161 |
atagcattgaactcacaatggcttctttttctacacttttctcctctctaactctcacaatagcccttctctcattttcttgctcatcacaacagttcat |
260 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7710534 |
atagcattgaactcaccatggcttctttttctacacttttctccactctaattctcacaatagcccttctctcattttcttgctcatcacaacagttctt |
7710633 |
T |
|
| Q |
261 |
ctcac |
265 |
Q |
| |
|
||||| |
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|
| T |
7710634 |
ctcac |
7710638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 252
Target Start/End: Original strand, 7698471 - 7698608
Alignment:
| Q |
104 |
atattcatttctataaaaaggaacccttca--catacattaaacactcatccattaccaatagcattgaactcacaatggcttctttttctacacttttc |
201 |
Q |
| |
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||||| |||||||||||||||||||||||| ||| ||||||||| |||| ||| | |||| |||||| ||||||||||||| | || |||||| |
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| T |
7698471 |
atattaatttctataaaaaggaacccttcagtcatgcattaaacattcatt--ttatc-----cattaaactcataatggcttcttttgcaactcttttc |
7698563 |
T |
|
| Q |
202 |
tcctctctaactctcacaatagcccttctctcattttcttgctcatcacaa |
252 |
Q |
| |
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||| ||| |||||||||||| |||||||||||||||| ||||||||| |
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| T |
7698564 |
tcc-ctc-----ctcacaatagccattctctcattttcttgttcatcacaa |
7698608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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