View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0374_low_52 (Length: 206)
Name: NF0374_low_52
Description: NF0374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0374_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 124; Significance: 6e-64; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 53 - 176
Target Start/End: Original strand, 6070483 - 6070606
Alignment:
| Q |
53 |
cttattagattgatcaacatacaatcgaactctttgggtgttataatcagcagtaacaaaatagccaggtggcaccactcgaatttcaactccattcatc |
152 |
Q |
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| T |
6070483 |
cttattagattgatcaacatacaatcgaactctttgggtgttataatcagcagtaacaaaatagccaggtggcaccactcgaatttcaactccattcatc |
6070582 |
T |
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| Q |
153 |
tcttcctttattttcctctctgct |
176 |
Q |
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| T |
6070583 |
tcttcctttattttcctctctgct |
6070606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 111 - 176
Target Start/End: Complemental strand, 6055877 - 6055812
Alignment:
| Q |
111 |
aaatagccaggtggcaccactcgaatttcaactccattcatctcttcctttattttcctctctgct |
176 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
6055877 |
aaatagccaggtggcaccactcgaatttcaactccatgcatctcttcctttattttcctctctgct |
6055812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 53 - 176
Target Start/End: Original strand, 6085559 - 6085682
Alignment:
| Q |
53 |
cttattagattgatcaacatacaatcgaactctttgggtgttataatcagcagtaacaaaatagccaggtggcaccactcgaatttcaactccattcatc |
152 |
Q |
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||||||||||| ||||||||||||||||||||| | | | |||||||||||||||| | |||| ||||||||| |||||||||||||| || |
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| T |
6085559 |
cttattagattcatcaacatacaatcgaactctcttgaacctgaaatcagcagtaacaaatgaatcagggggcaccacttgaatttcaactccagatata |
6085658 |
T |
|
| Q |
153 |
tcttcctttattttcctctctgct |
176 |
Q |
| |
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|||||||||||||| ||||||||| |
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|
| T |
6085659 |
tcttcctttatttttctctctgct |
6085682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 53 - 85
Target Start/End: Complemental strand, 6055920 - 6055888
Alignment:
| Q |
53 |
cttattagattgatcaacatacaatcgaactct |
85 |
Q |
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||||||||||||||||||||||||||||||||| |
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|
| T |
6055920 |
cttattagattgatcaacatacaatcgaactct |
6055888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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