View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0374_low_6 (Length: 481)
Name: NF0374_low_6
Description: NF0374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0374_low_6 |
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| [»] chr1 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 192 - 481
Target Start/End: Complemental strand, 37775087 - 37774798
Alignment:
| Q |
192 |
ccattaccatgaatcttccatcatcaaaacccattctctctgaatctcctcccaacatcttccccttcgtcaaaggcgaatgctgtaactgcggcatcaa |
291 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37775087 |
ccattaccatgaatcttccatcatcaaaacccattctctctgaatctcctcccaacatcttccccttcgtcaaaggcgaatgctgtaactgcggcatcaa |
37774988 |
T |
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| Q |
292 |
agaccgttggcttctccacaacgtcgtcgttcgcggcgtcgatcgtcgaatctgcacttcctgcgtcctccgtcttcatccatcatcattctgtccttgt |
391 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37774987 |
agaccgttggcttctccacaacgtcgtcgttcgcggcgtcgatcgtcgaatctgcacttcctgcgtcctccgtcttcatccatcatcattctgtccttgt |
37774888 |
T |
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| Q |
392 |
tgcttcgaattctacgaaaaccctctttccaccacttcctctgcgcaccgtttcgtttcctgcatcaaatgctcttctctcagccatatc |
481 |
Q |
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| T |
37774887 |
tgcttcgaattctacgaaaaccctctttccaccacttcctctgcgcaccgtttcgtttcctgcatcaaatgctcttctctcagccatatc |
37774798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 37775223 - 37775157
Alignment:
| Q |
56 |
acatcatcaaattacgatcatagggtatccgtttcaatcccttcttcttcttccttcgaaaccctag |
122 |
Q |
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| T |
37775223 |
acatcatcaaattacgatcatagggtatccgtttcaatcacttcttcttcttccttcgaaaccctag |
37775157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 199 - 481
Target Start/End: Original strand, 8814533 - 8814815
Alignment:
| Q |
199 |
catgaatcttccatcatcaaaacccattctctctgaatctcctcccaacatcttccccttcgtcaaaggcgaatgctgtaactgcggcatcaaagaccgt |
298 |
Q |
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| T |
8814533 |
catgaatcttccatcatcaaaacccattctctctaaatcccctcccaacatcttccccttcgtcaaaggcaaatgttgtaactgtggcatcaaagaccgc |
8814632 |
T |
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| Q |
299 |
tggcttctccacaacgtcgtcgttcgcggcgtcgatcgtcgaatctgcacttcctgcgtcctccgtcttcatccatcatcattctgtccttgttgcttcg |
398 |
Q |
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| T |
8814633 |
tggcttctccacaacgttgttgttcgcggcgtcgatcgtggaatctgcacctcttgcgtcctccgtcttcatccatcatcattctgcccttgttgcttca |
8814732 |
T |
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| Q |
399 |
aattctacgaaaaccctctttccaccacttcctctgcgcaccgtttcgtttcctgcatcaaatgctcttctctcagccatatc |
481 |
Q |
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| T |
8814733 |
aattctacgaaaaccctctttccaccacttccactacgcactgtttcatctcctgcatcaaatgctcttctctcagccatatc |
8814815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 201 - 269
Target Start/End: Original strand, 16603134 - 16603202
Alignment:
| Q |
201 |
tgaatcttccatcatcaaaacccattctctctgaatctcctcccaacatcttccccttcgtcaaaggcg |
269 |
Q |
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| T |
16603134 |
tgaatcttccataatcagaacccattctctctgaatcccctcccaacatattccccttcgtcaaaggcg |
16603202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 199 - 269
Target Start/End: Complemental strand, 43393770 - 43393700
Alignment:
| Q |
199 |
catgaatcttccatcatcaaaacccattctctctgaatctcctcccaacatcttccccttcgtcaaaggcg |
269 |
Q |
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|||||||||||||| |||||||||||||| || |||||| ||||||||||| ||||||||||||||||||| |
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| T |
43393770 |
catgaatcttccataatcaaaacccattccctttgaatcccctcccaacatattccccttcgtcaaaggcg |
43393700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 218 - 269
Target Start/End: Complemental strand, 23073162 - 23073111
Alignment:
| Q |
218 |
aaacccattctctctgaatctcctcccaacatcttccccttcgtcaaaggcg |
269 |
Q |
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| T |
23073162 |
aaacccattccctttgaatcccctcccaacatattccccttcgtcaaaggcg |
23073111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 199 - 269
Target Start/End: Original strand, 18573293 - 18573363
Alignment:
| Q |
199 |
catgaatcttccatcatcaaaacccattctctctgaatctcctcccaacatcttccccttcgtcaaaggcg |
269 |
Q |
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|||||||||||||| ||||||||| |||| || |||||| ||||||||||| ||||||||||||||||||| |
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| T |
18573293 |
catgaatcttccataatcaaaacctattccctttgaatcccctcccaacatattccccttcgtcaaaggcg |
18573363 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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