View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0374_low_8 (Length: 449)
Name: NF0374_low_8
Description: NF0374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0374_low_8 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 81 - 449
Target Start/End: Complemental strand, 26595004 - 26594632
Alignment:
| Q |
81 |
cccacctcctttttccttgcaccatcaagtcacttaccctcaaattacacttcttgcctttgaggggactgcaccccatttgattgactcatctgtaacc |
180 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26595004 |
cccacctcctttttccttgcaccatcaagtcacttaccctcaaattacacttcttgcctttgaggggactgcaccccatttgattgactcatctgtaacc |
26594905 |
T |
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| Q |
181 |
aaggatcatgcatcactcacactcttgtaccatcaccaatacaccatcttgctttcaataaccaaggtgacctctatttaaatgcaatgtttctaacaat |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26594904 |
aaggatcatgcatcactcacactcttgtaccatcaccaatacaccatcttgttttcaataaccaaggtgacctctatttaaatgcaatgtttctaacaat |
26594805 |
T |
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| Q |
281 |
tttttcttagtctctag-----tctactctatctgtataaattttttgaccctggaaactagagtaaccaaggaaaataattataaattaggaagaaatg |
375 |
Q |
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||||||||||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26594804 |
tttttcttagtctctagtctagtctactctatctgtaaaaaatttttgaccctggaaactagagtaaccaaggaaaataattataaattaggaagaaatg |
26594705 |
T |
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| Q |
376 |
tgtttttcatccgtataaaattcttaaattttgctgttagttcccataaaaattgccttctctgctcctccaca |
449 |
Q |
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|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||||| |
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| T |
26594704 |
tgtttttcatccctataaaattcttaaattttggtgttagttcccataaaaattgccttctttg-tcctccaca |
26594632 |
T |
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