View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0374_low_9 (Length: 433)

Name: NF0374_low_9
Description: NF0374
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0374_low_9
NF0374_low_9
[»] chr2 (2 HSPs)
chr2 (200-403)||(11762224-11762438)
chr2 (310-404)||(14360533-14360628)
[»] chr1 (4 HSPs)
chr1 (137-191)||(44529603-44529657)
chr1 (137-191)||(46035124-46035178)
chr1 (245-402)||(50151555-50151722)
chr1 (311-402)||(43013060-43013153)
[»] chr3 (1 HSPs)
chr3 (245-402)||(34020884-34021052)


Alignment Details
Target: chr2 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 200 - 403
Target Start/End: Original strand, 11762224 - 11762438
Alignment:
Q  200 aattatagatgtgatgttatgaacaagactggtgttcggatttaactcaatactcacaacacaagtgacaagctcaaggttgtgttgcaa----gggttg 295  Q
    ||||||||||||||||||||||   |   ||||||| |||||||||||||||||||||||| ||||| | ||||||||||||||  ||||    ||||||    
T  11762224 aattatagatgtgatgttatgagtgactatggtgtttggatttaactcaatactcacaacaaaagtggccagctcaaggttgtgcagcaatatagggttg 11762323  T
Q  296 tatctttgttttttatttt-------cgttatctttttggcacatgcttggtaatggtaggctttctttaggtttcggattttctcattgtaaatgaaac 388  Q
    |||||||||||| ||||||       |||||||||||||||||||||||||||| | ||||||||||||  || | || ||||||||||||||| |||||    
T  11762324 tatctttgttttctatttttttttctcgttatctttttggcacatgcttggtaacgataggctttctttgagtattgggttttctcattgtaaaagaaac 11762423  T
Q  389 gatgaaacttgcttc 403  Q
     |||||| |||||||    
T  11762424 aatgaaatttgcttc 11762438  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 310 - 404
Target Start/End: Original strand, 14360533 - 14360628
Alignment:
Q  310 attttcgttatctttttggcacatgcttggtaatggtaggctttctttaggtttcggattttctcattgt-aaatgaaacgatgaaacttgcttca 404  Q
    ||||| ||||||||||||||||||| |||||||||| ||  |||||||  |||| ||||||||||||||| |||  |||| |||||||||||||||    
T  14360533 atttttgttatctttttggcacatgtttggtaatggcagagtttctttgagttttggattttctcattgtaaaaaaaaactatgaaacttgcttca 14360628  T

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Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 44529657 - 44529603
Alignment:
Q  137 gccaactaagggtggtggagagtggtatgtccacgtaagttggtacatgtatcgg 191  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  44529657 gccaactaagggtggtggagagtggtatgtccacctaagttggtacatgtatcgg 44529603  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 137 - 191
Target Start/End: Complemental strand, 46035178 - 46035124
Alignment:
Q  137 gccaactaagggtggtggagagtggtatgtccacgtaagttggtacatgtatcgg 191  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  46035178 gccaactaaggatggtggagagtggtatgtccacctaagttggtacatgtatcgg 46035124  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 245 - 402
Target Start/End: Original strand, 50151555 - 50151722
Alignment:
Q  245 ctcaatactcacaacacaagtgacaagctcaaggttgtgttgc----aagggttgtatctttgtttttta----ttttcgttatctttttggcacatgct 336  Q
    |||||||||||||||||||||||||| |||||||||||| | |     |||||| ||||| |||||| ||    |||  |||| | ||||||||||||||    
T  50151555 ctcaatactcacaacacaagtgacaaactcaaggttgtgctaccatagagggttatatctctgttttctatggctttatgttaacattttggcacatgct 50151654  T
Q  337 tggta--atggtaggctttctttaggtttcggattttctcattgtaaatgaaacgatgaaacttgctt 402  Q
    |||||  |||||| ||||| |||  |||| | ||||||||| | |||| |||||||||||||||||||    
T  50151655 tggtaatatggtaagctttttttgagttttgaattttctcactctaaaagaaacgatgaaacttgctt 50151722  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 311 - 402
Target Start/End: Original strand, 43013060 - 43013153
Alignment:
Q  311 ttttcgttatctttttggcacatgcttggta--atggtaggctttctttaggtttcggattttctcattgtaaatgaaacgatgaaacttgctt 402  Q
    |||| |||||| |||||||||||||||||||  |||||| ||||| |||  |||| | ||||||||| | |||| |||||||||||||||||||    
T  43013060 tttttgttatcattttggcacatgcttggtaatatggtaagctttttttgagttttgaattttctcactctaaaagaaacgatgaaacttgctt 43013153  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 245 - 402
Target Start/End: Original strand, 34020884 - 34021052
Alignment:
Q  245 ctcaatactcacaacacaagtgacaagctcaaggttgtgttgc----aagggttgtatctttgtttttta----ttttcgttatctttttggcacatgct 336  Q
    |||||||||||||||||||||||||| |||||||||||| | |     |||||| ||||| |||||| ||    |||  |||||| ||||||||||||||    
T  34020884 ctcaatactcacaacacaagtgacaaactcaaggttgtgctaccatagagggttatatctctgttttctatggctttgtgttatcattttggcacatgct 34020983  T
Q  337 tggta--atggtaggctttctttaggtttcggattttctcattgtaaatg-aaacgatgaaacttgctt 402  Q
    |||||  |||||| ||||| |||  |||| | ||||||||| | |||| | ||| ||||||||||||||    
T  34020984 tggtaatatggtaagctttttttgagttttgaattttctcactctaaaagaaaaagatgaaacttgctt 34021052  T

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