View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0375_high_4 (Length: 338)
Name: NF0375_high_4
Description: NF0375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0375_high_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 99 - 338
Target Start/End: Original strand, 3730696 - 3730937
Alignment:
| Q |
99 |
cattttcatgtttctacaagacaattaaaaatacaaaaagctagttttgttgaaagagtttaaaatgtc--tcttgatattgacaaacctgaatcatttc |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3730696 |
cattttcatgtttctacaagacaattaaaaatacaaaaagctagttttgttgaaagagtttaaaatgtcgttcttgatattgacaaacctgaatcatttc |
3730795 |
T |
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| Q |
197 |
taacaattctgaatttttccagtggccttcatcactcatcaagcaacctccatattcagaacatgtgcaattaccacccaaaaatgttggcaagttactg |
296 |
Q |
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|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3730796 |
taacaattctgaatttttccaggggccttgatcactcatcaagcaacctccatattcagaacatgtgcaattaccacccaaaaatgttggcaagttactg |
3730895 |
T |
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| Q |
297 |
aaaaattgaacaattagatctaagagtttcattaaacgcaga |
338 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
3730896 |
aaaaattgaacaattagatctaagagtttcattaaacgcaga |
3730937 |
T |
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