View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0375_high_6 (Length: 286)

Name: NF0375_high_6
Description: NF0375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0375_high_6
NF0375_high_6
[»] chr6 (2 HSPs)
chr6 (11-92)||(24127481-24127562)
chr6 (177-258)||(24127647-24127728)
[»] chr8 (2 HSPs)
chr8 (12-92)||(45160705-45160785)
chr8 (177-258)||(45160537-45160618)
[»] chr3 (6 HSPs)
chr3 (177-258)||(8722971-8723052)
chr3 (177-258)||(9074858-9074939)
chr3 (196-258)||(8716656-8716718)
chr3 (196-258)||(9068543-9068605)
chr3 (37-92)||(8716496-8716551)
chr3 (37-92)||(9068383-9068438)
[»] chr7 (1 HSPs)
chr7 (177-248)||(9519047-9519118)


Alignment Details
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 11 - 92
Target Start/End: Original strand, 24127481 - 24127562
Alignment:
Q  11 cagagataaacaagaaaatatatctacttaaatttagaacaagataacttacatatgaaatggtgttaatcacatacccaac 92  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24127481 cagagataaacaagaaaatatatatacttaaatttagaacaagataacttacatatgaaatggtgttaatcacatacccaac 24127562  T

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Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 177 - 258
Target Start/End: Original strand, 24127647 - 24127728
Alignment:
Q  177 gagaaactaacagtttttgatatttcattgccgatctccatgttgctcaagcacagtggaattatctcacttaaaataaggt 258  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  24127647 gagaaactaacagtttttgatatttcattgccgatctccatgttgctcaagcagagtggaattatctcacttaaaataaggt 24127728  T

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Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 92
Target Start/End: Complemental strand, 45160785 - 45160705
Alignment:
Q  12 agagataaacaagaaaatatatctacttaaatttagaacaagataacttacatatgaaatggtgttaatcacatacccaac 92  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||    
T  45160785 agagataaacaagaaaatatatctacttaaatttagaacaagataactttcatatgaaattgtgttaatcacatacccaac 45160705  T

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Target: chr8; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 177 - 258
Target Start/End: Complemental strand, 45160618 - 45160537
Alignment:
Q  177 gagaaactaacagtttttgatatttcattgccgatctccatgttgctcaagcacagtggaattatctcacttaaaataaggt 258  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||| ||| |||||||||||||    
T  45160618 gagaaactaacagtttgtgatatttcatttccgatctccatgttgctcaagcacaatggaattacctcgcttaaaataaggt 45160537  T

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Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 177 - 258
Target Start/End: Original strand, 8722971 - 8723052
Alignment:
Q  177 gagaaactaacagtttttgatatttcattgccgatctccatgttgctcaagcacagtggaattatctcacttaaaataaggt 258  Q
    ||||||||||||||||| ||||||||||| ||||| |||||||||||| ||| || |||||||||||||||| |||||||||    
T  8722971 gagaaactaacagttttggatatttcatttccgatttccatgttgctctagcgcaatggaattatctcacttgaaataaggt 8723052  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 177 - 258
Target Start/End: Original strand, 9074858 - 9074939
Alignment:
Q  177 gagaaactaacagtttttgatatttcattgccgatctccatgttgctcaagcacagtggaattatctcacttaaaataaggt 258  Q
    ||||||||||||||||| ||||||||||| ||||| |||||||||||| ||| || |||||||||||||||| |||||||||    
T  9074858 gagaaactaacagttttggatatttcatttccgatttccatgttgctctagcgcaatggaattatctcacttgaaataaggt 9074939  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 8716656 - 8716718
Alignment:
Q  196 atatttcattgccgatctccatgttgctcaagcacagtggaattatctcacttaaaataaggt 258  Q
    |||||||||| ||||| ||||||||||||||||||| |||||||||||| |||||||||||||    
T  8716656 atatttcatttccgatttccatgttgctcaagcacaatggaattatctcgcttaaaataaggt 8716718  T

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Target: chr3; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 196 - 258
Target Start/End: Original strand, 9068543 - 9068605
Alignment:
Q  196 atatttcattgccgatctccatgttgctcaagcacagtggaattatctcacttaaaataaggt 258  Q
    |||||||||| ||||| ||||||||||||||||||| |||||||||||| |||||||||||||    
T  9068543 atatttcatttccgatttccatgttgctcaagcacaatggaattatctcgcttaaaataaggt 9068605  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 8716496 - 8716551
Alignment:
Q  37 cttaaatttagaacaagataacttacatatgaaatggtgttaatcacatacccaac 92  Q
    |||||||||||||||||||||||| || ||||||| ||||| ||||||||||||||    
T  8716496 cttaaatttagaacaagataactttcacatgaaattgtgttgatcacatacccaac 8716551  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 92
Target Start/End: Original strand, 9068383 - 9068438
Alignment:
Q  37 cttaaatttagaacaagataacttacatatgaaatggtgttaatcacatacccaac 92  Q
    |||||||||||||||||||||||| || ||||||| ||||| ||||||||||||||    
T  9068383 cttaaatttagaacaagataactttcacatgaaattgtgttgatcacatacccaac 9068438  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 9519118 - 9519047
Alignment:
Q  177 gagaaactaacagtttttgatatttcattgccgatctccatgttgctcaagcacagtggaattatctcactt 248  Q
    ||||||||||||||||| |||| ||| |||||||| ||||| ||||  | ||| ||||||||||||||||||    
T  9519118 gagaaactaacagttttggataattctttgccgatttccatattgcataggcatagtggaattatctcactt 9519047  T

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