View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0375_high_8 (Length: 268)
Name: NF0375_high_8
Description: NF0375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0375_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 48 - 239
Target Start/End: Original strand, 36780433 - 36780625
Alignment:
| Q |
48 |
acaactaagaaaataaattaaaatgtaaaatttgat-aagtttttgttttgttgactgttcatcttcaccatcatttttccagcatctgtacccacttct |
146 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
36780433 |
acaactaagaaaataaattaaaatgtaaaatttgattaagtttttgttttgttgactgttcatcttcaacatcatttttccagcatctgtacccacttct |
36780532 |
T |
|
| Q |
147 |
tcatcgccgtcggaatccgaccaccgtggaaacgtgtcgtgaccaactggcagcttgttcagtcatgatttttgttttctttcccaacatttt |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36780533 |
tcatcgccgtcggaatccgaccaccgtggaaacgtgtcgtgaccaactggcagcttgttcagtcatgatttttgttttctttcccaacatttt |
36780625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 49 - 239
Target Start/End: Complemental strand, 22980841 - 22980650
Alignment:
| Q |
49 |
caactaagaaaataaattaaaatgtaaaatttgat-aagtttttgttttgttgactgttcatcttcaccatcatttttccagcatctgtacccacttctt |
147 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
22980841 |
caactaagaaaataaattaaaatgtataatttgattaagtttttgttttgttgactgttcatcttcaacatcatttttccagcatctgtacccacttctt |
22980742 |
T |
|
| Q |
148 |
catcgccgtcggaatccgaccaccgtggaaacgtgtcgtgaccaactggcagcttgttcagtcatgatttttgttttctttcccaacatttt |
239 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22980741 |
catcgtcgtcggaatccgaccaccgtgaaaacgtgtcgtgaccaactggcagcttgttcagtcatgatttttgttttctttcccaacatttt |
22980650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 165; Significance: 3e-88; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 49 - 236
Target Start/End: Original strand, 32303345 - 32303533
Alignment:
| Q |
49 |
caactaagaaaataaattaaaatgtaaaatttgata-agtttttgttttgttgactgttcatcttcaccatcatttttccagcatctgtacccacttctt |
147 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
32303345 |
caactaagaaaataaattaaaatgtaaaatttgatttagtttttgttttgttgactgttcatcttcaacatcatttttctagcatctgtacccacttctt |
32303444 |
T |
|
| Q |
148 |
catcgccgtcggaatccgaccaccgtggaaacgtgtcgtgaccaactggcagcttgttcagtcatgatttttgttttctttcccaacat |
236 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32303445 |
catcgccgtcagaatccgaccaccgtggaaacgtgtcgtgaccaactggcagcttgttcagtcatgatttttgttttctttcccaacat |
32303533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 174
Target Start/End: Complemental strand, 48627418 - 48627378
Alignment:
| Q |
134 |
tgtacccacttcttcatcgccgtcggaatccgaccaccgtg |
174 |
Q |
| |
|
|||||| ||||||||||| |||||||||||||||| ||||| |
|
|
| T |
48627418 |
tgtacctacttcttcatccccgtcggaatccgaccgccgtg |
48627378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 18101165 - 18101214
Alignment:
| Q |
49 |
caactaagaaaataaattaaaatgtaaaatttga-taagtttttgttttg |
97 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| | ||||||||||||| |
|
|
| T |
18101165 |
caactaagaaaataaattaaaaagtaaaatttgattcagtttttgttttg |
18101214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 24316543 - 24316592
Alignment:
| Q |
49 |
caactaagaaaataaattaaaatgtaaaatttga-taagtttttgttttg |
97 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| | ||||||||||||| |
|
|
| T |
24316543 |
caactaagaaaataaattaaaaagtaaaatttgattcagtttttgttttg |
24316592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 437 times since January 2019
Visitors: 3060