View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0375_low_10 (Length: 319)
Name: NF0375_low_10
Description: NF0375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0375_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 94 - 307
Target Start/End: Complemental strand, 47602300 - 47602087
Alignment:
| Q |
94 |
atatatgtgtgtgatatagataacatagtactttcattgctacacactacacaaagagacacaatttattcacttctttttcgtcacggttgaaatggga |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47602300 |
atatatgtgtgtgatatagataacatagtactttcattgctacacactacacaaagagacacaatttattcacttctttttcgtcacggttgaaatggga |
47602201 |
T |
|
| Q |
194 |
tcacaacctcaatttgagcatccaaataaggcctttggttgggcagcaagagaccaatctggtcttctctcccctttcaatttctccagaaggttcattc |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47602200 |
tcacaacctcaatttgagcatccaaataaggcctttggttgggcagcaagagaccaatctggtcttctctcccctttcaatttctccagaaggttcattc |
47602101 |
T |
|
| Q |
294 |
attcacctcttcat |
307 |
Q |
| |
|
|||||||||||||| |
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| T |
47602100 |
attcacctcttcat |
47602087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 9e-30; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 183 - 301
Target Start/End: Original strand, 13388479 - 13388597
Alignment:
| Q |
183 |
ttgaaatgggatcacaacctcaatttgagcatccaaataaggcctttggttgggcagcaagagaccaatctggtcttctctcccctttcaatttctccag |
282 |
Q |
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||||||||| | |||||||| || |||| |||||||| |||||||||||||||||||| |||||| ||||||| |||||||||||||||| ||||| || |
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| T |
13388479 |
ttgaaatggcaacacaacctgaacttgaacatccaaacaaggcctttggttgggcagctagagacacatctggtgttctctcccctttcaacttctctag |
13388578 |
T |
|
| Q |
283 |
aaggttcattcattcacct |
301 |
Q |
| |
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||||||||||||| ||||| |
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| T |
13388579 |
aaggttcattcatccacct |
13388597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 183 - 307
Target Start/End: Original strand, 13407800 - 13407925
Alignment:
| Q |
183 |
ttgaaatgggatcacaacctcaatttgagcatccaaataaggcctttggttgggcagcaagagaccaatctggtcttctctcccctttcaatttctccag |
282 |
Q |
| |
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||||||||| | |||||||| |||||||||||||||| |||||||| ||||||||||| ||||| | |||||| |||||||| |||||||||||||||| |
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| T |
13407800 |
ttgaaatggcaacacaacctgaatttgagcatccaaagaaggccttcggttgggcagctagagatccttctggtgttctctccactttcaatttctccag |
13407899 |
T |
|
| Q |
283 |
aaggttca-ttcattcacctcttcat |
307 |
Q |
| |
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|||||||| |||||| |||| ||||| |
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| T |
13407900 |
aaggttcacttcatttacctattcat |
13407925 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 150 - 293
Target Start/End: Original strand, 13384659 - 13384801
Alignment:
| Q |
150 |
agacacaatttattcacttctttttcgtcacggttgaaatgggatcacaacctcaatttgagcatccaaataaggcctttggttgggcagcaagagacca |
249 |
Q |
| |
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||||||| |||||||||||| |||| ||||| ||||||||| | ||||||| ||||||| |||||||| |||||||||||||||||||| |||||| |
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| T |
13384659 |
agacacattttattcacttccttttggtcaca-ttgaaatggcaagacaacctgaatttgaacatccaaacaaggcctttggttgggcagctagagacac |
13384757 |
T |
|
| Q |
250 |
atctggtcttctctcccctttcaatttctccagaaggttcattc |
293 |
Q |
| |
|
|||||| |||||||||| ||||| ||||| ||||||||||||| |
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| T |
13384758 |
ttctggtgttctctcccccttcaacttctctagaaggttcattc |
13384801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 139 - 293
Target Start/End: Original strand, 13392860 - 13393017
Alignment:
| Q |
139 |
actacacaaagagacacaatttattc----acttctttttcgtcacggttgaaatgggatcacaacctcaatttgagcatccaaataaggcctttggttg |
234 |
Q |
| |
|
||||| ||||||||||||||| |||| |||| |||| ||||| |||||||||| | |||||||| ||||||| |||||||| ||||| |||||||| |
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| T |
13392860 |
actactcaaagagacacaattcattcgcttacttaatttttgtcac-gttgaaatggcaacacaacctgaatttgaacatccaaacaaggcatttggttg |
13392958 |
T |
|
| Q |
235 |
ggcagcaagagaccaatctggtcttctctcccctttcaatttctccagaaggttcattc |
293 |
Q |
| |
|
|||||| |||||| |||||| |||| ||||||||||| ||||||||||||||||||| |
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| T |
13392959 |
ggcagctagagacacttctggtgttctttcccctttcaacttctccagaaggttcattc |
13393017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 196 - 290
Target Start/End: Complemental strand, 13455112 - 13455018
Alignment:
| Q |
196 |
acaacctcaatttgagcatccaaataaggcctttggttgggcagcaagagaccaatctggtcttctctcccctttcaatttctccagaaggttca |
290 |
Q |
| |
|
||||||| ||||||||||| |||| |||||||||||||||||||| |||||| |||||| ||||||| ||||||||||||||||||||||||| |
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| T |
13455112 |
acaacctgaatttgagcattcaaagaaggcctttggttgggcagctagagactcttctggtgttctctctcctttcaatttctccagaaggttca |
13455018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 209 - 288
Target Start/End: Complemental strand, 13420348 - 13420269
Alignment:
| Q |
209 |
gagcatccaaataaggcctttggttgggcagcaagagaccaatctggtcttctctcccctttcaatttctccagaaggtt |
288 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||| | |||||| ||||||||||||||||||||||||||||||| |
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|
| T |
13420348 |
gagcatccaaagaaggcctttggttgggcagctagagatccttctggtgttctctcccctttcaatttctccagaaggtt |
13420269 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 212 - 288
Target Start/End: Complemental strand, 13427263 - 13427187
Alignment:
| Q |
212 |
catccaaataaggcctttggttgggcagcaagagaccaatctggtcttctctcccctttcaatttctccagaaggtt |
288 |
Q |
| |
|
||||| || |||||||||||||||||||| ||||| ||||||| |||| |||||||||||||||||||||||||| |
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| T |
13427263 |
catcctaagaaggcctttggttgggcagctagagattcatctggtgttctttcccctttcaatttctccagaaggtt |
13427187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 209 - 288
Target Start/End: Complemental strand, 13414821 - 13414742
Alignment:
| Q |
209 |
gagcatccaaataaggcctttggttgggcagcaagagaccaatctggtcttctctcccctttcaatttctccagaaggtt |
288 |
Q |
| |
|
|||||||| || ||||||||||| |||||||| ||||| | |||||| |||||||||| ||||||||||| |||||||| |
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|
| T |
13414821 |
gagcatcctaagaaggcctttggatgggcagctagagatccttctggtgttctctccccattcaatttctctagaaggtt |
13414742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 290
Target Start/End: Complemental strand, 13448180 - 13448111
Alignment:
| Q |
221 |
aaggcctttggttgggcagcaagagaccaatctggtcttctctcccctttcaatttctccagaaggttca |
290 |
Q |
| |
|
||||||||||| |||||||| |||||| |||||| |||| ||||||||| |||||| |||||||||| |
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|
| T |
13448180 |
aaggcctttggatgggcagctagagactcttctggtgttctatcccctttccatttctttagaaggttca |
13448111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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