View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0375_low_11 (Length: 318)
Name: NF0375_low_11
Description: NF0375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0375_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 5 - 233
Target Start/End: Original strand, 8315220 - 8315448
Alignment:
| Q |
5 |
gagaaaatggagttaacatgaacacaagtggaaaagtggaaggagctactgagggctcttggaaggataaagaagaaatctttgaaatcggggatcatgg |
104 |
Q |
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| T |
8315220 |
gagaaaatggagttaacatgaacataagtggaaaagtggaaggagctactgggggctcttggaaggataaagaagaaatctttgaagttggggatcatgg |
8315319 |
T |
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| Q |
105 |
tatgctaagaaatccaacggagttctatggnnnnnnnnngggaggaaaggtaggaaaggatgggatggaccattcatgatgataaaggttcgtccgaaca |
204 |
Q |
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| T |
8315320 |
tatgctaagaaatccaacggagttctatggtttctttttgggaggaaaggtaggaaaggatgggatggaccattcatgatgataaaggttcgtccgaaca |
8315419 |
T |
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| Q |
205 |
gagagattgtgatttaggatgaagtgatg |
233 |
Q |
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| T |
8315420 |
gagagattgtgatttaggataaagtgatg |
8315448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 16818037 - 16817811
Alignment:
| Q |
1 |
aagggagaaaatggagttaacatgaacacaagtggaaaagtggaaggagctactgagggctcttggaaggataaagaagaaatctttgaaatcggggatc |
100 |
Q |
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| T |
16818037 |
aagggagaaaaaggagtcaacatgaacataagtggaaaagtggaaagagctattgggggctcctagaaggatgaagaagaagactttgaagtcggggatc |
16817938 |
T |
|
| Q |
101 |
atggtatgctaagaaatccaacggagttctatggnnnnnnnnngggaggaaaggtaggaaaggatgggatggaccattcatgatgataaaggttcgtccg |
200 |
Q |
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| T |
16817937 |
gtgtcatgttaagacatccaacaaatttatatgg--tttctttgggaggaaagctaggaaaggattggatagaccattcatgatcaagaaggtttgtcat |
16817840 |
T |
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| Q |
201 |
aacagagagattgtgatttaggatgaagt |
229 |
Q |
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|||| |||||||||||||| |||||||| |
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| T |
16817839 |
aacaaagagattgtgatttgagatgaagt |
16817811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 16857194 - 16856968
Alignment:
| Q |
1 |
aagggagaaaatggagttaacatgaacacaagtggaaaagtggaaggagctactgagggctcttggaaggataaagaagaaatctttgaaatcggggatc |
100 |
Q |
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||||||||||| ||||| |||||||||| |||||||||||||||| |||||| || |||||| | ||||||| |||||||| ||||||| ||||||||| |
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| T |
16857194 |
aagggagaaaaaggagtcaacatgaacataagtggaaaagtggaaagagctattgggggctcctagaaggatgaagaagaagactttgaagtcggggatc |
16857095 |
T |
|
| Q |
101 |
atggtatgctaagaaatccaacggagttctatggnnnnnnnnngggaggaaaggtaggaaaggatgggatggaccattcatgatgataaaggttcgtccg |
200 |
Q |
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|| ||| ||||| ||||||| | || ||||| |||||||||| ||||||||||| |||| ||||||||||||| | |||||| ||| |
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| T |
16857094 |
gtgtcatgttaagacatccaacaaatttatatgg--tttctttgggaggaaagctaggaaaggattggatagaccattcatgatcaagaaggtttgtcat |
16856997 |
T |
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| Q |
201 |
aacagagagattgtgatttaggatgaagt |
229 |
Q |
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|||| |||||||||||||| |||||||| |
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| T |
16856996 |
aacaaagagattgtgatttgagatgaagt |
16856968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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