View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0375_low_13 (Length: 311)
Name: NF0375_low_13
Description: NF0375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0375_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 103 - 213
Target Start/End: Complemental strand, 391850 - 391740
Alignment:
| Q |
103 |
ttctttttcaacgcttaaggggttggagtttcttcctcgtttcaagtttggatttatatttacgtcttttatgctgcaacattgatttattaggctacaa |
202 |
Q |
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| T |
391850 |
ttctttttcaacgcttaaggggttggagtttcttcctcgtttcaagtttggatttatatttacgtcttttatgctgcaacattgatttattaggctacaa |
391751 |
T |
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| Q |
203 |
catctgttttt |
213 |
Q |
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||||||||||| |
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| T |
391750 |
catctgttttt |
391740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 391905 - 391847
Alignment:
| Q |
1 |
ctaaaacaattaatgaacacatggatttaaaaaacaaagctagtaaattgccactttct |
59 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
391905 |
ctaaaacaattaatgaacacatgaatttaaaaaacaaatctagtaaattgccactttct |
391847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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