View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0375_low_20 (Length: 209)
Name: NF0375_low_20
Description: NF0375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0375_low_20 |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold1779 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 18342847 - 18342986
Alignment:
| Q |
1 |
tttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18342847 |
tttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgt |
18342946 |
T |
|
| Q |
101 |
caccaatataagcataccgtcgattactagctcctatgat |
140 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
18342947 |
caccaatataagcataccgtcgattactagctcctatgat |
18342986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 77
Target Start/End: Original strand, 48288822 - 48288862
Alignment:
| Q |
37 |
atcacttcagatctttctaaagatgaatttggtactgcttt |
77 |
Q |
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||||||||||||||||||||||||||||||| |||| |||| |
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| T |
48288822 |
atcacttcagatctttctaaagatgaatttgatactccttt |
48288862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 36840620 - 36840759
Alignment:
| Q |
1 |
tttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36840620 |
tttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgt |
36840719 |
T |
|
| Q |
101 |
caccaatataagcataccgtcgattactagctcctatgat |
140 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||| |
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| T |
36840720 |
caccaatataagcataccgtcgattactagctcctatgat |
36840759 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 116; Significance: 3e-59; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 164517 - 164378
Alignment:
| Q |
1 |
tttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
164517 |
tttagttctttacaagtacgtacagttacaaccctgatcacttcagatatttctaaagatgaatttgatactgcttttttgattacatcaacaacaatgt |
164418 |
T |
|
| Q |
101 |
caccaatataagcataccgtcgattactagctcctatgat |
140 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||| |
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| T |
164417 |
caccaatataagcataccgttgattactagctcctatgat |
164378 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 116; Significance: 3e-59; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 14249209 - 14249348
Alignment:
| Q |
1 |
tttagttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
14249209 |
tttagttctttacaagtacgtacagttacaaccctgatcacttcagatatttctaaagatgaatttgatactgcttttttgattacatcaacaacaatgt |
14249308 |
T |
|
| Q |
101 |
caccaatataagcataccgtcgattactagctcctatgat |
140 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||| |
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| T |
14249309 |
caccaatataagcataccgttgattactagctcctatgat |
14249348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 106; Significance: 3e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 31 - 140
Target Start/End: Original strand, 46699127 - 46699236
Alignment:
| Q |
31 |
gccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcaccaatataagcataccgtcgattactag |
130 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46699127 |
gccctgatcacttcagatctttctaaagatgaatttggtactgctttttttattacagcaacaacaatgtcaccaatataagcataccgtcgattactag |
46699226 |
T |
|
| Q |
131 |
ctcctatgat |
140 |
Q |
| |
|
|||||||||| |
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|
| T |
46699227 |
ctcctatgat |
46699236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1779 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: scaffold1779
Description:
Target: scaffold1779; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 4 - 139
Target Start/End: Complemental strand, 867 - 732
Alignment:
| Q |
4 |
agttctttacaagtacgtacaattacagccctgatcacttcagatctttctaaagatgaatttggtactgcttttttgattacagcaacaacaatgtcac |
103 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| |||||||||| || || |||||||||||||| ||||| |||||||||| || ||||| |
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| T |
867 |
agttctttacaagtacgtacaattacagctctgatcacttctgatctttctagaggtgtatttggtactgcttccttgatcacagcaacaataacgtcac |
768 |
T |
|
| Q |
104 |
caatataagcataccgtcgattactagctcctatga |
139 |
Q |
| |
|
|||||| |||||| || ||||||||||||||||||| |
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| T |
767 |
caatatgagcatatcggcgattactagctcctatga |
732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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