View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0375_low_3 (Length: 512)
Name: NF0375_low_3
Description: NF0375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0375_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 155; Significance: 5e-82; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 102 - 260
Target Start/End: Complemental strand, 392005 - 391847
Alignment:
| Q |
102 |
atgaaattacctttgtgaaaaataaaaggactaatatgcttataagtttaaaacttggatgagaccgacacatgtgctgctagggttttgcaaaaacaag |
201 |
Q |
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| T |
392005 |
atgaaattacctttgtgaaaaataaaaggactaatatgcttataagtttaaaacttggatgagaccgacacatgtgctgctagggttttgcaaaaacaag |
391906 |
T |
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| Q |
202 |
ctaaaacaattaatgaacacatgaatttaaaaaacaaagctagtaaattgccactttct |
260 |
Q |
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| T |
391905 |
ctaaaacaattaatgaacacatgaatttaaaaaacaaatctagtaaattgccactttct |
391847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 304 - 414
Target Start/End: Complemental strand, 391850 - 391740
Alignment:
| Q |
304 |
ttctttttcaacgcttaaggggttggagtttcttcctcgtttcaagtttggatttatatttacgtcttttatgctgcaacattgatttattaggctacaa |
403 |
Q |
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| T |
391850 |
ttctttttcaacgcttaaggggttggagtttcttcctcgtttcaagtttggatttatatttacgtcttttatgctgcaacattgatttattaggctacaa |
391751 |
T |
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| Q |
404 |
catctgttttt |
414 |
Q |
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| T |
391750 |
catctgttttt |
391740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 36 - 103
Target Start/End: Complemental strand, 392095 - 392028
Alignment:
| Q |
36 |
ataaattaaaattattattttaagttaggtatgtaatttaattgtttagttgatttgtaagatgcaat |
103 |
Q |
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| T |
392095 |
ataaattaaaattataattttaagttaggtatgtaatttaattgtttagttgatttgtaagatgcaat |
392028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 392326 - 392283
Alignment:
| Q |
1 |
tctgatttctgaggtcacctttgctttatttgctaataaattaa |
44 |
Q |
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| T |
392326 |
tctgatttctgaggtcacctttgctttatttgctaataaattaa |
392283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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