View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0375_low_9 (Length: 329)
Name: NF0375_low_9
Description: NF0375
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0375_low_9 |
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| [»] chr5 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 51 - 329
Target Start/End: Original strand, 28100357 - 28100635
Alignment:
| Q |
51 |
gagtgagatgaactgttgattctaagttgcttctattttcatctcaaatgtgattcatttgttttaccagacatgacccactagatgttgttaatactca |
150 |
Q |
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| T |
28100357 |
gagtgaaatgaactgttgattctaagttgcttctattttcatctcaaatgtgattcatttgttttaccagacatgacccactagatgttgttaatactca |
28100456 |
T |
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| Q |
151 |
gttatctgcaaagcataatgcaaactttcaattttatctataactcactttataataagtaagcgtagttaactattcattagtctataatatcacacta |
250 |
Q |
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| T |
28100457 |
gttatctgcaaagcataatgcaaactttcaattttatctataactaactttatcataaataagcgtagttaactattcattagtctataatatcacacta |
28100556 |
T |
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| Q |
251 |
tcaacagtacgcacctcaggttcaacaatgtcgaattcaacagtgttcgatttcaaatcaactataagttggatcataa |
329 |
Q |
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| T |
28100557 |
tcaacagtacgcacctcaggttcaacaatgtcgaattcaacagtgttcgatttcaaatcaactataagttgaatcataa |
28100635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 329
Target Start/End: Complemental strand, 33781160 - 33781092
Alignment:
| Q |
261 |
gcacctcaggttcaacaatgtcgaattcaacagtgttcgatttcaaatcaactataagttggatcataa |
329 |
Q |
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| T |
33781160 |
gcacctcagtttcaacaatatcaagttcatcaatgttcgatttcaaatcaacaagaggttgaatcataa |
33781092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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