View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0376_high_1 (Length: 612)
Name: NF0376_high_1
Description: NF0376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0376_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 30 - 527
Target Start/End: Complemental strand, 24716249 - 24715752
Alignment:
| Q |
30 |
ggaaagatctaatgcagcgaaccggaatttggaagggtgtggaccgggttcgtcgtcggaccggacgaggagttcggtggtgaatggattgaagaagaag |
129 |
Q |
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| T |
24716249 |
ggaaagatctaatgcagcgaaccggaatttggaagggtgtggaccgggttcatcgtcggaccggacgaggagttcggtggtgaatggattgaagaagaag |
24716150 |
T |
|
| Q |
130 |
ttgaaggattctatggagagttttaatcgtttgcgtgaagttattacaacggagtatagagaaactgttcaacggcgnnnnnnnactgttactggagaga |
229 |
Q |
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| T |
24716149 |
ttgaaggattctatggagagttttaatcgtttgcgtgaagttattacaacggagtatagagagactgttcaacggcgtttttttactgttactggagaga |
24716050 |
T |
|
| Q |
230 |
atcctgatgataagactcttgatctattgatatctactggtaatttttatatctctttgattttgttgtttaaaactaatcatgttttatgataatttga |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24716049 |
atcctgatgataagactcttgatctattgatatctactggtaatttttatatctctttgattttgttgtttaaaactaatcatgttttatgataatttga |
24715950 |
T |
|
| Q |
330 |
tgttgaaattaacttttatataaataaattctagtgtgttttactaggtgatcatcatgagttgaattcttcatcaattttggattggaaaataatttga |
429 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24715949 |
tgttgaaattaatttttatataaataaattctagtgtgttttactaggtgatcatcatgagttgaattcttcatcaattttggattggaaaataatttga |
24715850 |
T |
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| Q |
430 |
cttaattgaattggtttattggttggtatgtagtatatacaagtgaggagaatgtgtatgattctccttagtgtgagggtactagtatgatgatgtcc |
527 |
Q |
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| T |
24715849 |
cttaattgaattggtttattggttggtatatagtatatacaagtgaggagaatgtgtatgattctccttagtgtgagggtactagtatgatgatgtcc |
24715752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 104 - 156
Target Start/End: Original strand, 43315732 - 43315784
Alignment:
| Q |
104 |
cggtggtgaatggattgaagaagaagttgaaggattctatggagagttttaat |
156 |
Q |
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||||||||| ||| |||| |||||| ||||| ||||| ||||||||||||||| |
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| T |
43315732 |
cggtggtgagtggtttgaggaagaatttgaaagattcgatggagagttttaat |
43315784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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