View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0376_high_11 (Length: 289)

Name: NF0376_high_11
Description: NF0376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0376_high_11
NF0376_high_11
[»] chr8 (2 HSPs)
chr8 (56-257)||(23450145-23450346)
chr8 (56-257)||(24495259-24495459)
[»] chr2 (3 HSPs)
chr2 (56-257)||(23844676-23844876)
chr2 (56-257)||(24431474-24431674)
chr2 (56-257)||(23210791-23210991)
[»] chr1 (1 HSPs)
chr1 (56-257)||(32410381-32410581)
[»] scaffold0436 (1 HSPs)
scaffold0436 (56-257)||(881-1081)
[»] chr4 (2 HSPs)
chr4 (56-257)||(23844886-23845086)
chr4 (56-146)||(18544653-18544742)
[»] chr3 (2 HSPs)
chr3 (56-249)||(12056879-12057070)
chr3 (59-141)||(13296217-13296298)
[»] scaffold0149 (1 HSPs)
scaffold0149 (56-257)||(36716-36916)
[»] scaffold0064 (1 HSPs)
scaffold0064 (61-257)||(12191-12386)
[»] chr7 (3 HSPs)
chr7 (56-221)||(16478173-16478335)
chr7 (214-257)||(16481238-16481281)
chr7 (59-141)||(42516-42597)
[»] scaffold0670 (1 HSPs)
scaffold0670 (72-146)||(5701-5774)


Alignment Details
Target: chr8 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 56 - 257
Target Start/End: Original strand, 23450145 - 23450346
Alignment:
Q  56 acatcatcatcttacgtcattagcaacttatcattatttttacaccatatatttgtccacttatgtctaactcataattttgtcatattcacgtcatatc 155  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||    
T  23450145 acatcatcatcttacgtcattagcaactcatcattatttttacaccatatattcgtctacttatgtctaactcttaattttgtcatattcacgtcatatc 23450244  T
Q  156 taaatcttacacccaccattagtttaattttcattctttgcatcttttagtcctagtgacatacttcatccttcatcttatccgttcatttaacccacct 255  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||||||||||    
T  23450245 taaatcttacacccaccattagtttaattttcattctttgcattttttactcttagtgacatacttcatccttcatcttatccgtccatttaacccacct 23450344  T
Q  256 at 257  Q
    ||    
T  23450345 at 23450346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 56 - 257
Target Start/End: Original strand, 24495259 - 24495459
Alignment:
Q  56 acatcatcatcttacgtcattagcaacttatcattatttttacaccatatatttgtccacttatgtctaactcataattttgtcatattcacgtcatatc 155  Q
    ||||||||||||||| |||||||||||| ||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||     
T  24495259 acatcatcatcttacatcattagcaactcatcattatttt-acaccatatattcgtctacttatgtctaactcataattttgtcatattcacatcatatt 24495357  T
Q  156 taaatcttacacccaccattagtttaattttcattctttgcatcttttagtcctagtgacatacttcatccttcatcttatccgttcatttaacccacct 255  Q
    ||||||||||||||||||||||||| |||||||||||  |||||||||| ||||||||||||||||||||||||||||||||| | |||| |||| ||||    
T  24495358 taaatcttacacccaccattagtttgattttcattctcagcatcttttactcctagtgacatacttcatccttcatcttatccatgcattaaacctacct 24495457  T
Q  256 at 257  Q
    ||    
T  24495458 at 24495459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 56 - 257
Target Start/End: Original strand, 23844676 - 23844876
Alignment:
Q  56 acatcatcatcttacgtcattagcaacttatcattatttttacaccatatatttgtccacttatgtctaactcataattttgtcatattcacgtcatatc 155  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||| || |||||||    
T  23844676 acatcatcatcttacgtcattagcaactcatcattatttt-acaccatatattcgtctacttatgtctaactcataattttgtcatatttacatcatatc 23844774  T
Q  156 taaatcttacacccaccattagtttaattttcattctttgcatcttttagtcctagtgacatacttcatccttcatcttatccgttcatttaacccacct 255  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  23844775 taaatcttacacccaccattagtttaattttcattctctacatcttttactcctagtgacacacttcatccttcatcttattcgttcatttaacccacct 23844874  T
Q  256 at 257  Q
    ||    
T  23844875 at 23844876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 56 - 257
Target Start/End: Complemental strand, 24431674 - 24431474
Alignment:
Q  56 acatcatcatcttacgtcattagcaacttatcattatttttacaccatatatttgtccacttatgtctaactcataattttgtcatattcacgtcatatc 155  Q
    |||||||||||||| ||||||||||||| ||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||    
T  24431674 acatcatcatcttatgtcattagcaactcatcattatttt-acaccatatattcgtctacttatgtctaactcataattttgtcatattcacatcatatc 24431576  T
Q  156 taaatcttacacccaccattagtttaattttcattctttgcatcttttagtcctagtgacatacttcatccttcatcttatccgttcatttaacccacct 255  Q
    ||| ||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  24431575 taattcttacacccaccattagtttaattttcattctctacatcttttactcctagtgacatatttcatccttcatcttatccgttcacttaacccacct 24431476  T
Q  256 at 257  Q
    ||    
T  24431475 at 24431474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 56 - 257
Target Start/End: Complemental strand, 23210991 - 23210791
Alignment:
Q  56 acatcatcatcttacgtcattagcaacttatcattatttttacaccatatatttgtccacttatgtctaactcataattttgtcatattcacgtcatatc 155  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||| ||| |||    
T  23210991 acatcatcatcttacgtcattagcaactcatcattatttt-acaccatatattcgtctacttatgtctaactcataattttgtcatattcacatcacatc 23210893  T
Q  156 taaatcttacacccaccattagtttaattttcattctttgcatcttttagtcctagtgacatacttcatccttcatcttatccgttcatttaacccacct 255  Q
    ||||||||||||||||||||||||||||||||||||| | | ||||||| |||| |||||| ||||||||||||||||||| ||||||||||||||||||    
T  23210892 taaatcttacacccaccattagtttaattttcattctcttcttcttttactccttgtgacacacttcatccttcatcttattcgttcatttaacccacct 23210793  T
Q  256 at 257  Q
    ||    
T  23210792 at 23210791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 56 - 257
Target Start/End: Original strand, 32410381 - 32410581
Alignment:
Q  56 acatcatcatcttacgtcattagcaacttatcattatttttacaccatatatttgtccacttatgtctaactcataattttgtcatattcacgtcatatc 155  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||    
T  32410381 acatcatcatcttacgtcattagcaactcatcattatttt-acaccatatattcgtctacttatgtctaactcataattttgtcatattcacatcatatc 32410479  T
Q  156 taaatcttacacccaccattagtttaattttcattctttgcatcttttagtcctagtgacatacttcatccttcatcttatccgttcatttaacccacct 255  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||| || ||||||||||||||||||| ||||||||||||||||||    
T  32410480 taaatcttacacccaccattagtttaattttcattctctgcatcttttactcctggtggcacacttcatccttcatcttattcgttcatttaacccacct 32410579  T
Q  256 at 257  Q
    ||    
T  32410580 at 32410581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0436 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: scaffold0436
Description:

Target: scaffold0436; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 56 - 257
Target Start/End: Complemental strand, 1081 - 881
Alignment:
Q  56 acatcatcatcttacgtcattagcaacttatcattatttttacaccatatatttgtccacttatgtctaactcataattttgtcatattcacgtcatatc 155  Q
    |||||||||||||||||||||||| ||| ||||||||||| |||||||||||| ||| |||||||||||||||||||||||| ||||||||| ||||||     
T  1081 acatcatcatcttacgtcattagcgactcatcattatttt-acaccatatattcgtctacttatgtctaactcataattttggcatattcacatcatata 983  T
Q  156 taaatcttacacccaccattagtttaattttcattctttgcatcttttagtcctagtgacatacttcatccttcatcttatccgttcatttaacccacct 255  Q
    ||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  982 taaatcttacacccaccattagtttaattttcattctctgcgtcttttactcctagtgacacacttcatccttcatcttatccgttcttttaacccacct 883  T
Q  256 at 257  Q
    ||    
T  882 at 881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 146; Significance: 6e-77; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 56 - 257
Target Start/End: Complemental strand, 23845086 - 23844886
Alignment:
Q  56 acatcatcatcttacgtcattagcaacttatcattatttttacaccatatatttgtccacttatgtctaactcataattttgtcatattcacgtcatatc 155  Q
    |||||||||||||||||||||||||||| || |||||||| |||||||||||| ||| || ||||||||||||||||||||||||||||||| |||||||    
T  23845086 acatcatcatcttacgtcattagcaactcataattatttt-acaccatatattcgtctacctatgtctaactcataattttgtcatattcacatcatatc 23844988  T
Q  156 taaatcttacacccaccattagtttaattttcattctttgcatcttttagtcctagtgacatacttcatccttcatcttatccgttcatttaacccacct 255  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||| ||| | ||||| ||||||||||||||||||||||||||||||||||||||    
T  23844987 taaatcttacacccaccattagtttaattttcattctctacatcttttactcccactgacacacttcatccttcatcttatccgttcatttaacccacct 23844888  T
Q  256 at 257  Q
    ||    
T  23844887 at 23844886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 56 - 146
Target Start/End: Complemental strand, 18544742 - 18544653
Alignment:
Q  56 acatcatcatcttacgtcattagcaacttatcattatttttacaccatatatttgtccacttatgtctaactcataattttgtcatattca 146  Q
    |||||||||||||||||||||||||||| ||||||| ||| ||| |||||||||||| ||||||| |||||||||||||||||||||||||    
T  18544742 acatcatcatcttacgtcattagcaactcatcattaattt-acatcatatatttgtctacttatgactaactcataattttgtcatattca 18544653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 142; Significance: 1e-74; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 56 - 249
Target Start/End: Original strand, 12056879 - 12057070
Alignment:
Q  56 acatcatcatcttacgtcattagcaacttatcattatttttacaccatatatttgtccacttatgtctaactcataattttgtcatattcacgtcatatc 155  Q
    |||||||||||||||||||||||||| | ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||    
T  12056879 acatcatcatcttacgtcattagcaattcatcattatttt-acaccatatatttgtctacttatgtctaactcataattttgtcatattcacat-atatc 12056976  T
Q  156 taaatcttacacccaccattagtttaattttcattctttgcatcttttagtcctagtgacatacttcatccttcatcttatccgttcatttaac 249  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||    
T  12056977 taaatcttacacccaccattagtttaattttcattctctacatcttttactcctagtgacacacttcatccttcatcatatccgttcatttaac 12057070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 141
Target Start/End: Original strand, 13296217 - 13296298
Alignment:
Q  59 tcatcatcttacgtcattagcaacttatcattatttttacaccatatatttgtccacttatgtctaactcataattttgtcat 141  Q
    |||| |||||||||||||||||||| ||||| |   |||||||||||||| ||| ||||| |||||| |||| || |||||||    
T  13296217 tcattatcttacgtcattagcaactcatcatca-acttacaccatatattcgtctacttaagtctaagtcatcatcttgtcat 13296298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0149 (Bit Score: 138; Significance: 4e-72; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 56 - 257
Target Start/End: Complemental strand, 36916 - 36716
Alignment:
Q  56 acatcatcatcttacgtcattagcaacttatcattatttttacaccatatatttgtccacttatgtctaactcataattttgtcatattcacgtcatatc 155  Q
    ||||||||||||||| |||||||||||| ||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||    
T  36916 acatcatcatcttacatcattagcaactcatcattatttt-acaccatatattcgtctacttatgtctaactcataattttgtcatattcacatcatatc 36818  T
Q  156 taaatcttacacccaccattagtttaattttcattctttgcatcttttagtcctagtgacatacttcatccttcatcttatccgttcatttaacccacct 255  Q
    ||||||||||||||||||||||||| ||||||||||| ||||| ||||| || |||||||||||||||||||||||||||||| | |||| |||| ||||    
T  36817 taaatcttacacccaccattagtttgattttcattctctgcatattttactcatagtgacatacttcatccttcatcttatccatgcattaaacctacct 36718  T
Q  256 at 257  Q
    ||    
T  36717 at 36716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 129; Significance: 8e-67; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 61 - 257
Target Start/End: Complemental strand, 12386 - 12191
Alignment:
Q  61 atcatcttacgtcattagcaacttatcattatttttacaccatatatttgtccacttatgtctaactcataattttgtcatattcacgtcatatctaaat 160  Q
    |||||||||||||||||| |||| ||||||||||| | |||||||||| ||| ||| || ||||||||||||||||||||||||||| ||||||||||||    
T  12386 atcatcttacgtcattagaaactcatcattatttt-ataccatatattcgtctactcatttctaactcataattttgtcatattcacatcatatctaaat 12288  T
Q  161 cttacacccaccattagtttaattttcattctttgcatcttttagtcctagtgacatacttcatccttcatcttatccgttcatttaacccacctat 257  Q
    | | ||||||||||||||||| |||||||||| | ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  12287 cgttcacccaccattagtttagttttcattctctacatcttttactcctagtgacacacttcatccttcatcttatccgttcatttaacccacctat 12191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 5e-56; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 56 - 221
Target Start/End: Original strand, 16478173 - 16478335
Alignment:
Q  56 acatcatcatcttacgtcattagcaacttatcattatttttacaccatatatttgtccacttatgtctaactcataattttgtcatattcacgtcatatc 155  Q
    |||||||||||||||||||||||||||| ||||||||||| |||||||||||| ||| |||||||||||||||||||||  |||||||| || |||||||    
T  16478173 acatcatcatcttacgtcattagcaactcatcattatttt-acaccatatattcgtctacttatgtctaactcataatt--gtcatattaacatcatatc 16478269  T
Q  156 taaatcttacacccaccattagtttaattttcattctttgcatcttttagtcctagtgacatactt 221  Q
    |||||||||||||||||||||||| |||||||||||| ||||| ||||| ||||||||||||||||    
T  16478270 taaatcttacacccaccattagttcaattttcattctctgcatattttactcctagtgacatactt 16478335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 214 - 257
Target Start/End: Original strand, 16481238 - 16481281
Alignment:
Q  214 acatacttcatccttcatcttatccgttcatttaacccacctat 257  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  16481238 acatacttcatccttcatcttatccgttcatttaacccacctat 16481281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 59 - 141
Target Start/End: Complemental strand, 42597 - 42516
Alignment:
Q  59 tcatcatcttacgtcattagcaacttatcattatttttacaccatatatttgtccacttatgtctaactcataattttgtcat 141  Q
    |||| |||||||||||||||||||| |||||||  ||||||||||||||| ||| ||||| |||||| |||| || |||||||    
T  42597 tcattatcttacgtcattagcaactcatcatta-atttacaccatatattcgtctacttaagtctaagtcatcatcttgtcat 42516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0670 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0670
Description:

Target: scaffold0670; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 72 - 146
Target Start/End: Original strand, 5701 - 5774
Alignment:
Q  72 tcattagcaacttatcattatttttacaccatatatttgtccacttatgtctaactcataattttgtcatattca 146  Q
    ||||||||||||  |||||| ||| |||||||||||| ||| |||||||||||||||||||||||||||| ||||    
T  5701 tcattagcaactcttcattaattt-acaccatatattcgtctacttatgtctaactcataattttgtcatgttca 5774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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