View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0376_high_14 (Length: 266)

Name: NF0376_high_14
Description: NF0376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0376_high_14
NF0376_high_14
[»] chr4 (17 HSPs)
chr4 (66-173)||(10184867-10184974)
chr4 (93-161)||(43189852-43189920)
chr4 (96-161)||(49495557-49495622)
chr4 (89-151)||(45577790-45577852)
chr4 (89-152)||(52673752-52673815)
chr4 (93-161)||(37695631-37695699)
chr4 (93-152)||(31445974-31446033)
chr4 (115-152)||(42034484-42034521)
chr4 (89-161)||(7555047-7555119)
chr4 (93-161)||(41720771-41720839)
chr4 (93-151)||(16320449-16320507)
chr4 (113-163)||(22318472-22318522)
chr4 (112-161)||(9435345-9435394)
chr4 (112-161)||(44324432-44324481)
chr4 (119-155)||(37859338-37859374)
chr4 (93-161)||(47642581-47642649)
chr4 (93-161)||(50178583-50178651)
[»] chr3 (14 HSPs)
chr3 (89-152)||(42547463-42547526)
chr3 (91-161)||(42035769-42035839)
chr3 (112-161)||(28625010-28625059)
chr3 (116-161)||(49107135-49107180)
chr3 (93-161)||(10747143-10747211)
chr3 (94-162)||(22484833-22484901)
chr3 (93-161)||(31883113-31883181)
chr3 (113-161)||(44000207-44000255)
chr3 (93-161)||(51925299-51925367)
chr3 (99-161)||(5442222-5442285)
chr3 (113-160)||(39079285-39079332)
chr3 (94-161)||(51813319-51813386)
chr3 (113-163)||(3867738-3867788)
chr3 (115-163)||(8067146-8067194)
[»] chr6 (11 HSPs)
chr6 (93-161)||(31870236-31870304)
chr6 (93-163)||(27824784-27824855)
chr6 (93-163)||(18597292-18597362)
chr6 (96-161)||(35004264-35004329)
chr6 (89-161)||(1004558-1004630)
chr6 (119-163)||(29203060-29203104)
chr6 (104-150)||(4064096-4064142)
chr6 (114-172)||(13412644-13412702)
chr6 (114-151)||(7396269-7396306)
chr6 (93-161)||(14808136-14808204)
chr6 (113-161)||(32614074-32614122)
[»] chr7 (16 HSPs)
chr7 (113-163)||(29455942-29455992)
chr7 (93-163)||(48445450-48445520)
chr7 (93-161)||(1363566-1363634)
chr7 (93-161)||(9913454-9913522)
chr7 (93-161)||(9927142-9927210)
chr7 (112-155)||(15035357-15035400)
chr7 (93-163)||(14608488-14608558)
chr7 (93-163)||(34295500-34295570)
chr7 (114-163)||(41903650-41903699)
chr7 (118-161)||(3359939-3359982)
chr7 (112-163)||(29372875-29372926)
chr7 (112-161)||(8083830-8083879)
chr7 (94-163)||(22724128-22724197)
chr7 (119-163)||(329425-329469)
chr7 (89-141)||(2048877-2048929)
chr7 (93-161)||(43368130-43368198)
[»] chr2 (6 HSPs)
chr2 (93-163)||(6896093-6896163)
chr2 (93-161)||(32766602-32766670)
chr2 (113-149)||(35170323-35170359)
chr2 (93-155)||(27462903-27462965)
chr2 (123-163)||(30712812-30712852)
chr2 (113-153)||(42202032-42202072)
[»] chr1 (18 HSPs)
chr1 (91-159)||(32785366-32785434)
chr1 (89-153)||(33937089-33937153)
chr1 (113-163)||(15540060-15540110)
chr1 (93-161)||(38663066-38663134)
chr1 (93-152)||(504572-504631)
chr1 (89-163)||(13994244-13994319)
chr1 (99-158)||(24173141-24173200)
chr1 (112-154)||(34283997-34284039)
chr1 (119-157)||(39739013-39739051)
chr1 (94-160)||(49799312-49799378)
chr1 (114-163)||(2761725-2761774)
chr1 (112-161)||(15324110-15324159)
chr1 (62-107)||(26894988-26895033)
chr1 (93-161)||(44738213-44738282)
chr1 (112-161)||(47093014-47093063)
chr1 (95-163)||(6144156-6144224)
chr1 (117-161)||(43678077-43678121)
chr1 (93-161)||(50304585-50304653)
[»] chr8 (8 HSPs)
chr8 (112-161)||(9624181-9624231)
chr8 (93-163)||(29611165-29611235)
chr8 (93-161)||(41548543-41548611)
chr8 (126-159)||(54129-54162)
chr8 (94-163)||(16485919-16485988)
chr8 (94-163)||(35225588-35225657)
chr8 (93-161)||(10466989-10467057)
chr8 (93-161)||(37618504-37618572)
[»] scaffold0650 (1 HSPs)
scaffold0650 (90-163)||(1744-1817)
[»] chr5 (4 HSPs)
chr5 (98-163)||(31644376-31644441)
chr5 (93-158)||(42013441-42013506)
chr5 (93-161)||(4689801-4689869)
chr5 (112-144)||(29788576-29788608)
[»] scaffold0062 (1 HSPs)
scaffold0062 (119-163)||(3729-3773)
[»] scaffold0054 (1 HSPs)
scaffold0054 (115-144)||(19854-19883)


Alignment Details
Target: chr4 (Bit Score: 92; Significance: 9e-45; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 66 - 173
Target Start/End: Complemental strand, 10184974 - 10184867
Alignment:
Q  66 atctactaataggtaagtaccgcacaaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatggt 165  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |    
T  10184974 atctactagtaggtaagtactgcacaaaacaacacaatacaaggtggaacagcacatgacaaacttttatggtattgaacaattttttgtcttatatgat 10184875  T
Q  166 attttgta 173  Q
    ||||||||    
T  10184874 attttgta 10184867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 93 - 161
Target Start/End: Complemental strand, 43189920 - 43189852
Alignment:
Q  93 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 161  Q
    |||||||||||||||||  || |||||||||| ||||||||||||||||||| ||||||||||||||||    
T  43189920 aacaacacaatacaaggaagagcaacacatgataaacttttatggtattgaataattttttgtcttata 43189852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 49495557 - 49495622
Alignment:
Q  96 aacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 161  Q
    ||||||||| ||||| ||||||||||| ||||||||||||| |||||||||||||||| |||||||    
T  49495557 aacacaatataaggtagaacaacacataacaaacttttatgatattgaacaattttttatcttata 49495622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 151
Target Start/End: Complemental strand, 45577852 - 45577790
Alignment:
Q  89 acaaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaatttt 151  Q
    |||||||||||||| | ||||| ||||||||||||||||| ||||||||||||||| ||||||    
T  45577852 acaaaacaacacaacataaggttgaacaacacatgacaaagttttatggtattgaataatttt 45577790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 152
Target Start/End: Original strand, 52673752 - 52673815
Alignment:
Q  89 acaaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttt 152  Q
    |||||||||||||| ||||||  ||||  ||||||||||||||||||||||||||| |||||||    
T  52673752 acaaaacaacacaacacaaggcagaactgcacatgacaaacttttatggtattgaataattttt 52673815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 161
Target Start/End: Complemental strand, 37695699 - 37695631
Alignment:
Q  93 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 161  Q
    |||||||||||||||||  ||||| |||| |||||| |||||||| |||||| |||||||||| |||||    
T  37695699 aacaacacaatacaagggagaacagcacaagacaaatttttatggcattgaataattttttgttttata 37695631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 152
Target Start/End: Complemental strand, 31446033 - 31445974
Alignment:
Q  93 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttt 152  Q
    |||||||||| |||| || ||| ||||||||||||||||||||||||||| | |||||||    
T  31446033 aacaacacaacacaaagtagaaaaacacatgacaaacttttatggtattggataattttt 31445974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 152
Target Start/End: Complemental strand, 42034521 - 42034484
Alignment:
Q  115 caacacatgacaaacttttatggtattgaacaattttt 152  Q
    |||||||||||||||||||||||||||||| |||||||    
T  42034521 caacacatgacaaacttttatggtattgaataattttt 42034484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 161
Target Start/End: Complemental strand, 7555119 - 7555047
Alignment:
Q  89 acaaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 161  Q
    |||||||||||||| |||||   ||||| |||| |||||| |||||||| |||||| |||||||||| |||||    
T  7555119 acaaaacaacacaacacaagacagaacatcacacgacaaatttttatggcattgaataattttttgttttata 7555047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 41720771 - 41720839
Alignment:
Q  93 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 161  Q
    ||||||| || |||| || ||||||||||||||||||||| ||| ||||| | ||||||| ||||||||    
T  41720771 aacaacataacacaaagtagaacaacacatgacaaactttaatgatattgtataatttttagtcttata 41720839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 151
Target Start/End: Original strand, 16320449 - 16320507
Alignment:
Q  93 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaatttt 151  Q
    |||||||||||| ||||  |||||||||| |||||| |||||||| |||||| ||||||    
T  16320449 aacaacacaatagaagggagaacaacacaagacaaatttttatggcattgaataatttt 16320507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 163
Target Start/End: Complemental strand, 22318522 - 22318472
Alignment:
Q  113 aacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 163  Q
    |||||||||||||||| ||||||| ||||||| ||||| |||| |||||||    
T  22318522 aacaacacatgacaaatttttatgatattgaataatttcttgttttatatg 22318472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 9435345 - 9435394
Alignment:
Q  112 gaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 161  Q
    |||||||||| |||||||||||||| |||||||  |||||| ||||||||    
T  9435345 gaacaacacacgacaaacttttatgatattgaattatttttggtcttata 9435394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 44324481 - 44324432
Alignment:
Q  112 gaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 161  Q
    ||||| ||||||||||| |||||||| |||||| |||||||||| |||||    
T  44324481 gaacagcacatgacaaatttttatggcattgaataattttttgttttata 44324432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 155
Target Start/End: Complemental strand, 37859374 - 37859338
Alignment:
Q  119 acatgacaaacttttatggtattgaacaattttttgt 155  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  37859374 acatgacaaacttgtattgtattgaacaattttttgt 37859338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 161
Target Start/End: Complemental strand, 47642649 - 47642581
Alignment:
Q  93 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 161  Q
    |||||||||||||||||  ||||| |||| || ||| |||||||  |||||| |||||||||| |||||    
T  47642649 aacaacacaatacaagggagaacagcacaggataaatttttatgacattgaataattttttgttttata 47642581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 161
Target Start/End: Complemental strand, 50178651 - 50178583
Alignment:
Q  93 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 161  Q
    |||| ||||||||||||  ||||| |||| |||||| |||||||  |||||| |||||||||| |||||    
T  50178651 aacatcacaatacaagggagaacatcacaggacaaatttttatgacattgaataattttttgttttata 50178583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 89 - 152
Target Start/End: Complemental strand, 42547526 - 42547463
Alignment:
Q  89 acaaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttt 152  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||| |||||||    
T  42547526 acaaaacaacacgatacaaggtagaacaacacatgacaaacttttatgatattgaataattttt 42547463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 91 - 161
Target Start/End: Complemental strand, 42035839 - 42035769
Alignment:
Q  91 aaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 161  Q
    |||||||||||  | ||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  42035839 aaaacaacacagaataaggtagaacaacacttgacaaacttttatggtattgaacaattttttctcttata 42035769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 28625059 - 28625010
Alignment:
Q  112 gaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 161  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  28625059 gaacaacacaagacaaacttttatggtattgaataattttttgtcttata 28625010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 116 - 161
Target Start/End: Original strand, 49107135 - 49107180
Alignment:
Q  116 aacacatgacaaacttttatggtattgaacaattttttgtcttata 161  Q
    |||||||||||||||| |||| ||| ||||||||||||||||||||    
T  49107135 aacacatgacaaacttatatgatatcgaacaattttttgtcttata 49107180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 10747143 - 10747211
Alignment:
Q  93 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 161  Q
    |||||||||||||||||  ||||| |||| |||||| |||||||  |||||| |||||||||| |||||    
T  10747143 aacaacacaatacaagggagaacagcacaagacaaatttttatgacattgaataattttttgttttata 10747211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 22484901 - 22484833
Alignment:
Q  94 acaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatat 162  Q
    ||||||||| | ||||| ||||| |||| |||||| ||||||||||||||| |||||| ||| ||||||    
T  22484901 acaacacaacataaggtagaacagcacaagacaaatttttatggtattgaataattttctgtattatat 22484833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 161
Target Start/End: Complemental strand, 31883181 - 31883113
Alignment:
Q  93 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 161  Q
    |||| ||||||||||||  |||||||||| |||||| |||||||  |||||| |||||||||| |||||    
T  31883181 aacagcacaatacaagggagaacaacacaggacaaatttttatgacattgaataattttttgttttata 31883113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 161
Target Start/End: Original strand, 44000207 - 44000255
Alignment:
Q  113 aacaacacatgacaaacttttatggtattgaacaattttttgtcttata 161  Q
    ||||| ||| |||||||||||||||||||||| ||||||| ||||||||    
T  44000207 aacaatacaagacaaacttttatggtattgaataatttttggtcttata 44000255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 161
Target Start/End: Complemental strand, 51925367 - 51925299
Alignment:
Q  93 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 161  Q
    |||| ||||| ||||||  ||||| ||||||||||| |||||||| |||||| |||||||||| |||||    
T  51925367 aacagcacaacacaaggcagaacagcacatgacaaatttttatggcattgaataattttttgttttata 51925299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 161
Target Start/End: Original strand, 5442222 - 5442285
Alignment:
Q  99 acaatacaaggtggaacaacacatgacaaa-cttttatggtattgaacaattttttgtcttata 161  Q
    ||||||||||||  ||||||||||||||||  |||||||| |||||| |||||||||| |||||    
T  5442222 acaatacaaggtataacaacacatgacaaattttttatggcattgaataattttttgttttata 5442285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 113 - 160
Target Start/End: Complemental strand, 39079332 - 39079285
Alignment:
Q  113 aacaacacatgacaaacttttatggtattgaacaattttttgtcttat 160  Q
    ||||||||||||||||||||||| |||||| | |||||||| ||||||    
T  39079332 aacaacacatgacaaacttttattgtattggataattttttatcttat 39079285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 94 - 161
Target Start/End: Original strand, 51813319 - 51813386
Alignment:
Q  94 acaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 161  Q
    ||||||||| ||||||  ||||||||||||| |||||||||| ||  |  ||||||||||||||||||    
T  51813319 acaacacaacacaaggcagaacaacacatgataaacttttatagtccttgacaattttttgtcttata 51813386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 163
Target Start/End: Complemental strand, 3867788 - 3867738
Alignment:
Q  113 aacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 163  Q
    |||||||||||||||  ||||||||||||||| ||||| |||| |||||||    
T  3867788 aacaacacatgacaagtttttatggtattgaataatttcttgttttatatg 3867738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 163
Target Start/End: Complemental strand, 8067194 - 8067146
Alignment:
Q  115 caacacatgacaaacttttatggtattgaacaattttttgtcttatatg 163  Q
    |||||||||||| |||||||||||||||||  ||||||  |||||||||    
T  8067194 caacacatgacatacttttatggtattgaatgatttttgatcttatatg 8067146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 161
Target Start/End: Complemental strand, 31870304 - 31870236
Alignment:
Q  93 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 161  Q
    |||||||||||| ||||  ||||||||||||||||| |||||||| |||||| |||||||||| |||||    
T  31870304 aacaacacaatataagggagaacaacacatgacaaatttttatggcattgaataattttttgttttata 31870236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 93 - 163
Target Start/End: Complemental strand, 27824855 - 27824784
Alignment:
Q  93 aacaacacaatacaaggt-ggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 163  Q
    |||| ||||| ||||||| ||||||| |||||||||||||||||||||||||| |||||||  |||||||||    
T  27824855 aacatcacaacacaaggttggaacaatacatgacaaacttttatggtattgaataatttttgatcttatatg 27824784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 163
Target Start/End: Complemental strand, 18597362 - 18597292
Alignment:
Q  93 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 163  Q
    |||||||||| || |||| ||||||||||| | ||| ||||||||||||||| |||||||||| |||||||    
T  18597362 aacaacacaacactaggtagaacaacacataataaatttttatggtattgaataattttttgttttatatg 18597292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 96 - 161
Target Start/End: Complemental strand, 35004329 - 35004264
Alignment:
Q  96 aacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 161  Q
    ||||||||||||||  ||||||||||| ||||||||||||| ||||||| | ||||| || |||||    
T  35004329 aacacaatacaaggcagaacaacacataacaaacttttatgatattgaatagtttttggtattata 35004264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 161
Target Start/End: Complemental strand, 1004630 - 1004558
Alignment:
Q  89 acaaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 161  Q
    |||||||||||||| | |||   ||||| |||||||||||||| ||  |||||||||| ||||||||||||||    
T  1004630 acaaaacaacacaacataagaaagaacatcacatgacaaacttataatgtattgaacatttttttgtcttata 1004558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 163
Target Start/End: Complemental strand, 29203104 - 29203060
Alignment:
Q  119 acatgacaaacttttatggtattgaacaattttttgtcttatatg 163  Q
    |||||||||| ||||||| |||||||||||| |||||||||||||    
T  29203104 acatgacaaatttttatgatattgaacaattatttgtcttatatg 29203060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 4064142 - 4064096
Alignment:
Q  104 acaaggtggaacaacacatgacaaacttttatggtattgaacaattt 150  Q
    ||||||| |||||| |||||||||||||||||| ||||||| |||||    
T  4064142 acaaggtagaacaatacatgacaaacttttatgatattgaataattt 4064096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 172
Target Start/End: Original strand, 13412644 - 13412702
Alignment:
Q  114 acaacacatgacaaacttttatggtattgaacaattttttgtcttatatggtattttgt 172  Q
    ||||||||||||||| |||||| |||||||| |||||||  ||||||||| | ||||||    
T  13412644 acaacacatgacaaatttttatagtattgaataatttttcatcttatatgattttttgt 13412702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 151
Target Start/End: Complemental strand, 7396306 - 7396269
Alignment:
Q  114 acaacacatgacaaacttttatggtattgaacaatttt 151  Q
    ||||||||||||||| ||||||||||||||| ||||||    
T  7396306 acaacacatgacaaatttttatggtattgaataatttt 7396269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 161
Target Start/End: Complemental strand, 14808204 - 14808136
Alignment:
Q  93 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 161  Q
    |||||||||||||||||  ||| | |||| |||||| |||||||| |||||| ||||||| || |||||    
T  14808204 aacaacacaatacaagggagaatagcacaggacaaatttttatggaattgaataatttttagttttata 14808136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 32614122 - 32614074
Alignment:
Q  113 aacaacacatgacaaacttttatggtattgaacaattttttgtcttata 161  Q
    ||||||| |||||||||||||||||||||  | ||||||| ||||||||    
T  32614122 aacaacatatgacaaacttttatggtattatataatttttggtcttata 32614074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 113 - 163
Target Start/End: Complemental strand, 29455992 - 29455942
Alignment:
Q  113 aacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 163  Q
    |||||||||||||||||||||||||||||||| ||| ||| ||||||||||    
T  29455992 aacaacacatgacaaacttttatggtattgaataatatttggtcttatatg 29455942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 163
Target Start/End: Original strand, 48445450 - 48445520
Alignment:
Q  93 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 163  Q
    |||||||||| ||||||   |||||||||||||||| ||||||||||||||| ||||| |||| |||||||    
T  48445450 aacaacacaacacaaggcataacaacacatgacaaatttttatggtattgaataatttcttgttttatatg 48445520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 1363566 - 1363634
Alignment:
Q  93 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 161  Q
    |||||||||  | ||||| ||||||||||||||||| |||||||| |||||| |||||||||| |||||    
T  1363566 aacaacacatcagaaggtagaacaacacatgacaaatttttatggcattgaataattttttgttttata 1363634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 9913454 - 9913522
Alignment:
Q  93 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 161  Q
    |||||||||||||||||  ||||| ||||||||||| |||||||| |||||| ||||||| || |||||    
T  9913454 aacaacacaatacaagggagaacaccacatgacaaatttttatggaattgaataatttttagttttata 9913522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 9927142 - 9927210
Alignment:
Q  93 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 161  Q
    |||||||||||||||||  ||||| ||||||||||| |||||||| |||||| ||||||| || |||||    
T  9927142 aacaacacaatacaagggagaacaccacatgacaaatttttatggaattgaataatttttagttttata 9927210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 112 - 155
Target Start/End: Complemental strand, 15035400 - 15035357
Alignment:
Q  112 gaacaacacatgacaaacttttatggtattgaacaattttttgt 155  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||    
T  15035400 gaacaacacatgacaaatttttatggtattgaataattttttgt 15035357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 163
Target Start/End: Complemental strand, 14608558 - 14608488
Alignment:
Q  93 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 163  Q
    |||||||||| ||||||   ||||||| | ||||||||||||||||||| ||||||||||  |||||||||    
T  14608558 aacaacacaacacaaggcataacaacataggacaaacttttatggtattaaacaatttttgatcttatatg 14608488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 163
Target Start/End: Complemental strand, 34295570 - 34295500
Alignment:
Q  93 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 163  Q
    |||||||||||||||||  ||||| |||| |||||| |||||||  |||||| |||||||||| |||||||    
T  34295570 aacaacacaatacaagggagaacagcacaagacaaatttttatgacattgaataattttttgttttatatg 34295500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 114 - 163
Target Start/End: Complemental strand, 41903699 - 41903650
Alignment:
Q  114 acaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 163  Q
    ||||||||| | ||||||||||||| |||||||||||||||| |||||||    
T  41903699 acaacacatcataaacttttatggtcttgaacaattttttgttttatatg 41903650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 118 - 161
Target Start/End: Complemental strand, 3359982 - 3359939
Alignment:
Q  118 cacatgacaaacttttatggtattgaacaattttttgtcttata 161  Q
    ||||||| ||||||||||| ||||||| ||||||||||||||||    
T  3359982 cacatgataaacttttatgatattgaataattttttgtcttata 3359939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 112 - 163
Target Start/End: Complemental strand, 29372926 - 29372875
Alignment:
Q  112 gaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 163  Q
    |||||| ||| ||||||||||||||||||| || ||||||| ||||||||||    
T  29372926 gaacaatacaagacaaacttttatggtattaaataatttttggtcttatatg 29372875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 8083879 - 8083830
Alignment:
Q  112 gaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 161  Q
    |||||||| || |||||||||| |||||||| | ||||||||||||||||    
T  8083879 gaacaacatataacaaacttttgtggtattgcataattttttgtcttata 8083830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 163
Target Start/End: Complemental strand, 22724197 - 22724128
Alignment:
Q  94 acaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 163  Q
    ||||||||| | ||||  |||||||||| || ||| ||||||||||||||| |||||| ||| |||||||    
T  22724197 acaacacaacataaggcagaacaacacaagataaatttttatggtattgaataattttctgtattatatg 22724128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 163
Target Start/End: Original strand, 329425 - 329469
Alignment:
Q  119 acatgacaaacttttatggtattgaacaattttttgtcttatatg 163  Q
    |||||||||| ||||||||||||||| ||||| |||| |||||||    
T  329425 acatgacaaatttttatggtattgaataatttcttgttttatatg 329469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 2048877 - 2048929
Alignment:
Q  89 acaaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtatt 141  Q
    |||||||||||||| ||||||  ||||||||||||| |||||  |||||||||    
T  2048877 acaaaacaacacaacacaaggcagaacaacacatgataaactcgtatggtatt 2048929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 43368130 - 43368198
Alignment:
Q  93 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 161  Q
    |||| ||||||||||||  ||||| ||||||||||| ||||||   |||||| |||||||||| |||||    
T  43368130 aacagcacaatacaagggagaacagcacatgacaaatttttatcacattgaataattttttgttttata 43368198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 163
Target Start/End: Original strand, 6896093 - 6896163
Alignment:
Q  93 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 163  Q
    |||||||||| ||||||   |||||||||||||||| ||||||||||||||| ||||| |||| |||||||    
T  6896093 aacaacacaacacaaggcataacaacacatgacaaatttttatggtattgaataatttcttgttttatatg 6896163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 93 - 161
Target Start/End: Complemental strand, 32766670 - 32766602
Alignment:
Q  93 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 161  Q
    ||||||||||| |||||  |||||||||| |||||| |||||||| |||||| |||||||||| |||||    
T  32766670 aacaacacaatgcaagggagaacaacacaggacaaatttttatggcattgaataattttttgttttata 32766602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 149
Target Start/End: Complemental strand, 35170359 - 35170323
Alignment:
Q  113 aacaacacatgacaaacttttatggtattgaacaatt 149  Q
    |||||||||||||||||||||||||| ||||||||||    
T  35170359 aacaacacatgacaaacttttatggtgttgaacaatt 35170323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 155
Target Start/End: Complemental strand, 27462965 - 27462903
Alignment:
Q  93 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgt 155  Q
    |||| ||||| ||||||| ||||||||||||||||| || ||||  |||||| ||||||||||    
T  27462965 aacagcacaacacaaggtagaacaacacatgacaaatttatatgacattgaataattttttgt 27462903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 30712812 - 30712852
Alignment:
Q  123 gacaaacttttatggtattgaacaattttttgtcttatatg 163  Q
    |||||| ||||||||||||||| |||||||||| |||||||    
T  30712812 gacaaatttttatggtattgaataattttttgttttatatg 30712852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 113 - 153
Target Start/End: Original strand, 42202032 - 42202072
Alignment:
Q  113 aacaacacatgacaaacttttatggtattgaacaatttttt 153  Q
    |||||||| |||||| |||||||||||||||| ||||||||    
T  42202032 aacaacacttgacaaccttttatggtattgaataatttttt 42202072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 32785434 - 32785366
Alignment:
Q  91 aaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtctta 159  Q
    ||||||| | |||||||||  |||||||||| ||||||||||||||||| |||| ||||||| ||||||    
T  32785434 aaaacaatataatacaaggcagaacaacacaagacaaacttttatggtaatgaataatttttggtctta 32785366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 153
Target Start/End: Complemental strand, 33937153 - 33937089
Alignment:
Q  89 acaaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaatttttt 153  Q
    |||||||| |||| || ||||| |||||||||| |||||||||||||||||||  ||||||||||    
T  33937153 acaaaacatcacactataaggtagaacaacacaagacaaacttttatggtattagacaatttttt 33937089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 113 - 163
Target Start/End: Complemental strand, 15540110 - 15540060
Alignment:
Q  113 aacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 163  Q
    |||||||||||||||  ||||||||||||||| |||||||||| |||||||    
T  15540110 aacaacacatgacaagtttttatggtattgaataattttttgttttatatg 15540060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 38663066 - 38663134
Alignment:
Q  93 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 161  Q
    |||||||||||| ||||  |||||||||| |||||| |||||||  |||||| |||||||||| |||||    
T  38663066 aacaacacaatataagggagaacaacacaggacaaatttttatgacattgaataattttttgttttata 38663134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 93 - 152
Target Start/End: Complemental strand, 504631 - 504572
Alignment:
Q  93 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttt 152  Q
    |||||||||| |||| || ||| |||||||| |||| ||||||||||||| |||||||||    
T  504631 aacaacacaacacaaagtagaataacacatgtcaaatttttatggtattggacaattttt 504572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 89 - 163
Target Start/End: Complemental strand, 13994319 - 13994244
Alignment:
Q  89 acaaaacaacacaatacaaggtggaacaacacatgacaaacttt-tatggtattgaacaattttttgtcttatatg 163  Q
    |||| ||||||||||||||||  |||||||||| |||||| ||| |||| ||||||| |||||| ||| |||||||    
T  13994319 acaacacaacacaatacaaggcagaacaacacaagacaaattttgtatgatattgaataattttatgttttatatg 13994244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 99 - 158
Target Start/End: Complemental strand, 24173200 - 24173141
Alignment:
Q  99 acaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtctt 158  Q
    |||||||||  | ||||||||||||||||||||||| ||||||  |||| ||||||||||    
T  24173200 acaatacaaaatagaacaacacatgacaaacttttaaggtatttgacaactttttgtctt 24173141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 34284039 - 34283997
Alignment:
Q  112 gaacaacacatgacaaacttttatggtattgaacaattttttg 154  Q
    |||||||||| |||||||||||||||||||||| || ||||||    
T  34284039 gaacaacacaagacaaacttttatggtattgaataagtttttg 34283997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 157
Target Start/End: Complemental strand, 39739051 - 39739013
Alignment:
Q  119 acatgacaaacttttatggtattgaacaattttttgtct 157  Q
    |||||| ||| ||||||||||||||||||||||||||||    
T  39739051 acatgataaatttttatggtattgaacaattttttgtct 39739013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 160
Target Start/End: Original strand, 49799312 - 49799378
Alignment:
Q  94 acaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttat 160  Q
    ||||| ||||||||| | ||||| |||| |||||||||||||| ||||||| ||| ||| |||||||    
T  49799312 acaactcaatacaagctagaacaccacaagacaaacttttatgatattgaataatatttggtcttat 49799378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 163
Target Start/End: Complemental strand, 2761774 - 2761725
Alignment:
Q  114 acaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 163  Q
    ||||||||||||| |||||||| |||||||| ||||||| || |||||||    
T  2761774 acaacacatgacagacttttatagtattgaataatttttggttttatatg 2761725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 15324110 - 15324159
Alignment:
Q  112 gaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 161  Q
    ||||||||||||| || ||||||||||| | || ||||||||||||||||    
T  15324110 gaacaacacatgaaaagcttttatggtaataaataattttttgtcttata 15324159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 107
Target Start/End: Original strand, 26894988 - 26895033
Alignment:
Q  62 tttgatctactaataggtaagtaccgcacaaaacaacacaatacaa 107  Q
    |||||||| |||| |||||||||||| |||||||||||||| ||||    
T  26894988 tttgatctgctaaaaggtaagtaccgaacaaaacaacacaagacaa 26895033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 93 - 161
Target Start/End: Complemental strand, 44738282 - 44738213
Alignment:
Q  93 aacaacacaatacaaggtggaacaacacatgacaaa-cttttatggtattgaacaattttttgtcttata 161  Q
    ||||| |||| ||||||| |||||||||||||||||  |||||||| |||||  |||||||||| |||||    
T  44738282 aacaatacaacacaaggtagaacaacacatgacaaattttttatggcattgagtaattttttgttttata 44738213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 161
Target Start/End: Complemental strand, 47093063 - 47093014
Alignment:
Q  112 gaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 161  Q
    ||||||||||||||||| ||||||  ||||||| ||||||||| ||||||    
T  47093063 gaacaacacatgacaaatttttataatattgaataattttttgccttata 47093014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 6144224 - 6144156
Alignment:
Q  95 caacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 163  Q
    |||||||| | ||||  ||||| |||| |||||| ||||||||||||||| |||||| ||| |||||||    
T  6144224 caacacaacataaggcagaacatcacaagacaaatttttatggtattgaataattttctgttttatatg 6144156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 161
Target Start/End: Complemental strand, 43678121 - 43678077
Alignment:
Q  117 acacatgacaaacttttatggtattgaacaattttttgtcttata 161  Q
    |||||| |||| | |||||||||||| ||||||||||||||||||    
T  43678121 acacataacaagcctttatggtattgtacaattttttgtcttata 43678077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 50304585 - 50304653
Alignment:
Q  93 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 161  Q
    |||| ||||||||||||  ||||| |||| |||||| |||||||  |||||| |||||||||| |||||    
T  50304585 aacagcacaatacaagggagaacagcacaggacaaatttttatgacattgaataattttttgttttata 50304653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 112 - 161
Target Start/End: Original strand, 9624181 - 9624231
Alignment:
Q  112 gaacaacacatgacaaacttttatggtattgaacaa-ttttttgtcttata 161  Q
    ||||||||||||||||| ||||||||||||||| || ||||||||||||||    
T  9624181 gaacaacacatgacaaatttttatggtattgaataatttttttgtcttata 9624231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 93 - 163
Target Start/End: Complemental strand, 29611235 - 29611165
Alignment:
Q  93 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 163  Q
    |||||||||| ||||||   ||||||||| |||||| ||||||||||||||| ||||| |||| |||||||    
T  29611235 aacaacacaacacaaggcataacaacacaggacaaatttttatggtattgaataatttcttgttttatatg 29611165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 41548543 - 41548611
Alignment:
Q  93 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 161  Q
    |||||||||||||||||  ||||| |||| |||||| |||||||  |||||| |||||||||| |||||    
T  41548543 aacaacacaatacaagggagaacatcacaggacaaatttttatgacattgaataattttttgttttata 41548611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 159
Target Start/End: Original strand, 54129 - 54162
Alignment:
Q  126 aaacttttatggtattgaacaattttttgtctta 159  Q
    ||||||||||||||||||| ||||||||||||||    
T  54129 aaacttttatggtattgaataattttttgtctta 54162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 163
Target Start/End: Complemental strand, 16485988 - 16485919
Alignment:
Q  94 acaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 163  Q
    ||||||||||| ||||  ||||| ||||  ||||| ||||||||||||||| |||||| ||| |||||||    
T  16485988 acaacacaatataaggcagaacagcacaaaacaaatttttatggtattgaataattttctgtattatatg 16485919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 163
Target Start/End: Original strand, 35225588 - 35225657
Alignment:
Q  94 acaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 163  Q
    ||||||||| |||||   |||||||||| |||||| ||||||||||||||| |||||  ||| |||||||    
T  35225588 acaacacaacacaagacagaacaacacaagacaaatttttatggtattgaataatttcctgttttatatg 35225657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 161
Target Start/End: Original strand, 10466989 - 10467057
Alignment:
Q  93 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 161  Q
    |||||||||||||||||  ||||| |||| |||||| |||||||  || ||| |||||||||| |||||    
T  10466989 aacaacacaatacaagggagaacagcacaggacaaatttttatgacatagaataattttttgttttata 10467057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 161
Target Start/End: Complemental strand, 37618572 - 37618504
Alignment:
Q  93 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 161  Q
    |||| ||||| ||||||  ||||| |||||||||||  ||||||| |||||| |||||||||| |||||    
T  37618572 aacagcacaacacaaggcagaacagcacatgacaaatgtttatggcattgaataattttttgttttata 37618504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 163
Target Start/End: Complemental strand, 1817 - 1744
Alignment:
Q  90 caaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 163  Q
    ||||||| ||||| |||||   ||||||||||  ||||| ||||||||||||||| |||||||||| |||||||    
T  1817 caaaacagcacaacacaagagagaacaacacagaacaaatttttatggtattgaataattttttgttttatatg 1744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 163
Target Start/End: Original strand, 31644376 - 31644441
Alignment:
Q  98 cacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 163  Q
    ||||||||||||| |||||||||| |||||| |||||||  |||||| |||||| ||| |||||||    
T  31644376 cacaatacaaggtagaacaacacaagacaaatttttatgacattgaataattttatgttttatatg 31644441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 158
Target Start/End: Original strand, 42013441 - 42013506
Alignment:
Q  93 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtctt 158  Q
    |||||||||||| || || |||||| | |||| ||||||||||| ||||||||||||||| |||||    
T  42013441 aacaacacaataaaaagtagaacaatagatgataaacttttatgatattgaacaatttttggtctt 42013506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 93 - 161
Target Start/End: Complemental strand, 4689869 - 4689801
Alignment:
Q  93 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 161  Q
    |||||||||| | ||||  ||||||||||||||||| |||||||  |||||| |||||||||| |||||    
T  4689869 aacaacacaacataaggcagaacaacacatgacaaatttttatgacattgaataattttttgttttata 4689801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 144
Target Start/End: Complemental strand, 29788608 - 29788576
Alignment:
Q  112 gaacaacacatgacaaacttttatggtattgaa 144  Q
    ||||||||||||| |||||||||||||||||||    
T  29788608 gaacaacacatgataaacttttatggtattgaa 29788576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 163
Target Start/End: Complemental strand, 3773 - 3729
Alignment:
Q  119 acatgacaaacttttatggtattgaacaattttttgtcttatatg 163  Q
    |||||||||||||||||| ||||||| |||||||| |||||||||    
T  3773 acatgacaaacttttatgatattgaataattttttatcttatatg 3729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 144
Target Start/End: Original strand, 19854 - 19883
Alignment:
Q  115 caacacatgacaaacttttatggtattgaa 144  Q
    ||||||||||||||||||||||||||||||    
T  19854 caacacatgacaaacttttatggtattgaa 19883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1838 times since January 2019
Visitors: 3091