View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0376_high_3 (Length: 444)

Name: NF0376_high_3
Description: NF0376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0376_high_3
NF0376_high_3
[»] chr4 (4 HSPs)
chr4 (87-394)||(10246582-10246889)
chr4 (91-224)||(42473373-42473506)
chr4 (144-199)||(20343608-20343664)
chr4 (142-213)||(17813164-17813236)
[»] chr3 (1 HSPs)
chr3 (100-213)||(36921514-36921626)
[»] chr1 (2 HSPs)
chr1 (143-228)||(26807343-26807430)
chr1 (136-225)||(41078787-41078880)
[»] chr7 (3 HSPs)
chr7 (100-211)||(23375216-23375324)
chr7 (256-318)||(23375090-23375152)
chr7 (256-329)||(19840736-19840809)
[»] chr5 (2 HSPs)
chr5 (258-360)||(31640286-31640388)
chr5 (142-211)||(12673230-12673300)
[»] chr6 (1 HSPs)
chr6 (171-223)||(28157511-28157564)
[»] chr2 (3 HSPs)
chr2 (151-225)||(26741015-26741090)
chr2 (171-213)||(12597551-12597593)
chr2 (136-213)||(23650838-23650916)
[»] chr8 (3 HSPs)
chr8 (135-223)||(9025098-9025188)
chr8 (136-225)||(10644897-10644987)
chr8 (136-221)||(31004224-31004309)


Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 87 - 394
Target Start/End: Complemental strand, 10246889 - 10246582
Alignment:
Q  87 tcatcattaacatatgttcataaatcaatttaggtgaaaatgattatcttaaccttaactttgttggcttgacctatcttaaccttcaattattgattag 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10246889 tcatcattaacatatgttcataaatcaatttaggtgaaaatgattatcttaaccttaactttgttggcttgacctatcttaaccttcaattattgattag 10246790  T
Q  187 gtgtagacataaattaataataattgtacttactttgacgttgttatgactcaccttagacactagggtagtaaccattgaaaagagttaatgaccaata 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10246789 gtgtagacataaattaataataattgtacttactttgacgttgttatgactcaccttagacactagggtagtaaccattgaaaagagttaatgaccaata 10246690  T
Q  287 cattggtctaactatctttttcaaaggtattagaaacaagtaaccaataacattattgtcttagtttgtagttacatcaacgattcaaggaaggaaatct 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||    
T  10246689 cattggtctaactatctttttcaaaggtattagaaacaagtaaccaataacatcattgtcttagtttgtagttacctcaacgattcaaggaaggaaatct 10246590  T
Q  387 tttctatc 394  Q
    ||||||||    
T  10246589 tttctatc 10246582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 91 - 224
Target Start/End: Complemental strand, 42473506 - 42473373
Alignment:
Q  91 cattaacatatgttcataaatcaatttaggtgaaaatgattatcttaaccttaactttgttggcttgacctatcttaacct-tcaattattgattaggtg 189  Q
    |||| ||| ||||||||||||| |||||||| | | |||||||  ||||| ||||||||||||||||||| || ||||| | ||||||||||||||  |     
T  42473506 cattgacaaatgttcataaatcgatttaggtcacattgattat--taaccataactttgttggcttgacccattttaacttctcaattattgattatatt 42473409  T
Q  190 tagacataaattaataataattg-tacttactttga 224  Q
    |||||||||| |||||||||||| ||||||||||||    
T  42473408 tagacataaactaataataattgttacttactttga 42473373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 144 - 199
Target Start/End: Original strand, 20343608 - 20343664
Alignment:
Q  144 actttgttggcttgacctatcttaacc-ttcaattattgattaggtgtagacataaa 199  Q
    |||||||||| ||||||||| |||||| |||||||||||||||| | ||||||||||    
T  20343608 actttgttggtttgacctattttaaccattcaattattgattagatttagacataaa 20343664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 142 - 213
Target Start/End: Complemental strand, 17813236 - 17813164
Alignment:
Q  142 taactttgttggcttgacctatcttaacc-ttcaattattgattaggtgtagacataaattaataataattgt 213  Q
    |||||||| ||| ||||||||  |||| | |||||||||||||||| | |||||||||| |||||||| ||||    
T  17813236 taactttgctgggttgacctagtttaatcattcaattattgattagatttagacataaactaataatacttgt 17813164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 100 - 213
Target Start/End: Complemental strand, 36921626 - 36921514
Alignment:
Q  100 atgttcataaatcaatttaggtgaaaatgattatcttaaccttaactttgttggcttgacctatcttaacc-ttcaattattgattaggtgtagacataa 198  Q
    ||||| ||||||| | |||||| | |||||||||  ||||| ||||||||||||| ||||||||  ||||| || | ||||||||||| | |||||||||    
T  36921626 atgtttataaatcgaattaggtaacaatgattat--taaccctaactttgttggcctgacctattataaccgtttagttattgattagatttagacataa 36921529  T
Q  199 attaataataattgt 213  Q
    | |||| ||||||||    
T  36921528 actaatgataattgt 36921514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 143 - 228
Target Start/End: Complemental strand, 26807430 - 26807343
Alignment:
Q  143 aactttgttggcttgacctatcttaacc-ttcaattattgattaggtgtagacataaattaataataa-ttgtacttactttgacgtt 228  Q
    ||||||||||||||||||||  |||||| |||||||||||||||| | || ||||||| ||||| ||| || ||||||||||| ||||    
T  26807430 aactttgttggcttgacctagtttaaccattcaattattgattagatttatacataaactaatattaatttttacttactttggcgtt 26807343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 136 - 225
Target Start/End: Original strand, 41078787 - 41078880
Alignment:
Q  136 taaccttaactttgttggcttgacctatcttaa-ccttc-aattattgattaggtgtagacataaattaataataat--tgtacttactttgac 225  Q
    |||||||||||||| ||||||||||||| ||||   ||| ||||||||||||| | |||||||||| |||| |||||  |||||||||||||||    
T  41078787 taaccttaactttgatggcttgacctattttaattattcaaattattgattagatttagacataaactaatgataattgtgtacttactttgac 41078880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 100 - 211
Target Start/End: Complemental strand, 23375324 - 23375216
Alignment:
Q  100 atgttcataaatcaatttaggtgaaaatgattatcttaaccttaactttgttggcttgacctatcttaac-cttcaattattgattaggtgtagacataa 198  Q
    |||||||||||||||||||| | | ||||||||   ||||| ||||  ||||| |||||||||| |||||  |||||||||| ||||||| |||||||||    
T  23375324 atgttcataaatcaatttagattacaatgatta--ctaaccctaac--tgttgccttgacctattttaacttttcaattattaattaggtttagacataa 23375229  T
Q  199 attaataataatt 211  Q
    | |||| ||||||    
T  23375228 actaatgataatt 23375216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 318
Target Start/End: Complemental strand, 23375152 - 23375090
Alignment:
Q  256 agtaaccattgaaaagagttaatgaccaatacattggtctaactatctttttcaaaggtatta 318  Q
    ||||||||||||| ||||||| ||||||||| |||||||||  ||| || ||||| |||||||    
T  23375152 agtaaccattgaagagagttattgaccaataaattggtctagatattttgttcaagggtatta 23375090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 329
Target Start/End: Complemental strand, 19840809 - 19840736
Alignment:
Q  256 agtaaccattgaaaagagttaatgaccaatacattggtctaactatctttttcaaaggtattagaaacaagtaa 329  Q
    ||||||||||| | || |||| ||||||| ||||||| |||||||| || |||||| ||||| ||| |||||||    
T  19840809 agtaaccattggagagtgttagtgaccaagacattggcctaactattttgttcaaaagtattggaatcaagtaa 19840736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 258 - 360
Target Start/End: Complemental strand, 31640388 - 31640286
Alignment:
Q  258 taaccattgaaaagagttaatgaccaatacattggtctaactatctttttcaaaggtattagaaacaagtaaccaataacattattgtcttagtttgtag 357  Q
    ||||||||||||||||||| ||||||| | |||||   | |||| || ||||||||||||| || ||||||| ||||| |||| |  || ||||||||||    
T  31640388 taaccattgaaaagagttagtgaccaagaaattggcgaagctattttcttcaaaggtattaaaatcaagtaatcaatagcattgtcttcatagtttgtag 31640289  T
Q  358 tta 360  Q
    |||    
T  31640288 tta 31640286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 12673300 - 12673230
Alignment:
Q  142 taactttgttggcttgacctatcttaacc-ttcaattattgattaggtgtagacataaattaataataatt 211  Q
    |||||||||||  ||||||||| |||| | |||||||||||||| | | |||||||||| |||||||||||    
T  12673300 taactttgttgatttgacctattttaatcattcaattattgatttgatttagacataaactaataataatt 12673230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 28157564 - 28157511
Alignment:
Q  171 ttcaattattgattaggtgtagacataaattaataataattg-tacttactttg 223  Q
    |||||||||||||||| | |||||||||| |||||||||||| |||||||||||    
T  28157564 ttcaattattgattagatttagacataaaataataataattgttacttactttg 28157511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 151 - 225
Target Start/End: Original strand, 26741015 - 26741090
Alignment:
Q  151 tggcttgacctatcttaacc-ttcaattattgattaggtgtagacataaattaataataattgtacttactttgac 225  Q
    |||||| |||||| |||||  ||||||||||||||||   |||||||||| |||| ||||||||||||| ||||||    
T  26741015 tggctttacctattttaactgttcaattattgattagagttagacataaactaatgataattgtacttaatttgac 26741090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 12597551 - 12597593
Alignment:
Q  171 ttcaattattgattaggtgtagacataaattaataataattgt 213  Q
    |||||||||||||||| | |||||||||| |||||||||||||    
T  12597551 ttcaattattgattagatttagacataaagtaataataattgt 12597593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 213
Target Start/End: Original strand, 23650838 - 23650916
Alignment:
Q  136 taaccttaactttgttggcttgacctatcttaacct-tcaattattgattaggtgtagacataaattaataataattgt 213  Q
    |||||||||||||| | |||||||||   |||| |  ||||||||||||||| | |||||||||| |||||||||||||    
T  23650838 taaccttaactttgctagcttgaccttgtttaatcaatcaattattgattagatttagacataaactaataataattgt 23650916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 9025188 - 9025098
Alignment:
Q  135 ttaaccttaactttgttggcttgacctatcttaacc-ttcaattattgattaggtgtagacataaattaataataattg-tacttactttg 223  Q
    |||||| |||||||||||| || |||||| |||||| |||||||||||||||| | |||| ||||| |||  ||| ||| |||||||||||    
T  9025188 ttaaccctaactttgttggttttacctattttaaccgttcaattattgattagatttagaaataaactaacgatacttgttacttactttg 9025098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 136 - 225
Target Start/End: Complemental strand, 10644987 - 10644897
Alignment:
Q  136 taaccttaactttgttggcttgacctatcttaacc-ttcaattattgattaggtgtagacataaattaataataattgtacttactttgac 225  Q
    ||||| ||||||||||||| |||| ||  |||||| |||  ||||||||||| | |||||||||| ||||||||||||   ||||||||||    
T  10644987 taaccctaactttgttggcatgacttagtttaaccattcggttattgattagatctagacataaaataataataattgctattactttgac 10644897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 136 - 221
Target Start/End: Complemental strand, 31004309 - 31004224
Alignment:
Q  136 taaccttaactttgttggcttgacctatcttaacc-ttcaattattgattaggtgtagacataaattaataataattg-tacttactt 221  Q
    ||||| ||||||||| ||||||| |||  |||| | |||||||||||||||| | ||||||||||  ||||||||||| |||||||||    
T  31004309 taaccctaactttgtaggcttgatctagtttaatcattcaattattgattagatttagacataaa--aataataattgttacttactt 31004224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 910 times since January 2019
Visitors: 3072