View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0376_low_14 (Length: 311)
Name: NF0376_low_14
Description: NF0376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0376_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 91 - 237
Target Start/End: Complemental strand, 23131804 - 23131658
Alignment:
| Q |
91 |
catcatcaaagcaaaaaatgtcctccgtaatggttatctatggcgcgctggttcagatacctcctccttttggttccataattggagcccccatggactg |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23131804 |
catcatcaaagcaaaaaatgtcctccgtaatggttatctatggcgcgctggttcaggtacctcctccttttggttccataattggagcccccatggactg |
23131705 |
T |
|
| Q |
191 |
attggctcacacgttcccatcattgacatccacgatattcatctcac |
237 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
23131704 |
attggctcacacgttcccatcattgacatccacgatattcaactcac |
23131658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 91 - 237
Target Start/End: Original strand, 11898076 - 11898222
Alignment:
| Q |
91 |
catcatcaaagcaaaaaatgtcctccgtaatggttatctatggcgcgctggttcagatacctcctccttttggttccataattggagcccccatggactg |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11898076 |
catcatcaaagcaaaaaatgtcctccgtaatggttatctatggcgcgctggttcaggtacctcctccttttggttccataattggagcccccatggactg |
11898175 |
T |
|
| Q |
191 |
attggctcacacgttcccatcattgacatccacgatattcatctcac |
237 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11898176 |
attggctcacacgttcccatcattgacatccacgatattcaactcac |
11898222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 91 - 238
Target Start/End: Complemental strand, 26431917 - 26431770
Alignment:
| Q |
91 |
catcatcaaagcaaaaaatgtcctccgtaatggttatctatggcgcgctggttcagatacctcctccttttggttccataattggagcccccatggactg |
190 |
Q |
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||||||||||||||||||| | || ||||||| ||||||||||| ||||| || | | |||||||||||||||| |||||||||||||| || |||||| |
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| T |
26431917 |
catcatcaaagcaaaaaatattctttgtaatggatatctatggcgtgctggctcgggttcctcctccttttggtttcataattggagcccacacggactg |
26431818 |
T |
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| Q |
191 |
attggctcacacgttcccatcattgacatccacgatattcatctcact |
238 |
Q |
| |
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||||| || ||||||||||||||||| || |||||||| |||||| |
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| T |
26431817 |
attggttccttggttcccatcattgacatacatgatattcacctcact |
26431770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 91 - 237
Target Start/End: Original strand, 20285777 - 20285923
Alignment:
| Q |
91 |
catcatcaaagcaaaaaatgtcctccgtaatggttatctatggcgcgctggttcagatacctcctccttttggttccataattggagcccccatggactg |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20285777 |
catcatcaaagcaaaaaatgtcctccgtaatggttatctatggcgcgctggttcaggtacctcctccttttggttccataattggagcccccatggactg |
20285876 |
T |
|
| Q |
191 |
attggctcacacgttcccatcattgacatccacgatattcatctcac |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
20285877 |
attggctcacacgttcccatcattgacatccacgatattcaactcac |
20285923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 91 - 237
Target Start/End: Complemental strand, 14652899 - 14652753
Alignment:
| Q |
91 |
catcatcaaagcaaaaaatgtcctccgtaatggttatctatggcgcgctggttcagatacctcctccttttggttccataattggagcccccatggactg |
190 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||||||||||||| ||||| |||| || |||||| |||||||| ||||||||||||||||| |||||| |
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| T |
14652899 |
catcatcaaagcaaaaaatattctccgtaatggttatctatggcgtgctggctcaggtaactcctctttttggtttcataattggagcccccacggactg |
14652800 |
T |
|
| Q |
191 |
attggctcacacgttcccatcattgacatccacgatattcatctcac |
237 |
Q |
| |
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||||| |||| ||||||||||||||||| || |||||||| ||||| |
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| T |
14652799 |
attggttcactggttcccatcattgacatacatgatattcaactcac |
14652753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 7818103 - 7818159
Alignment:
| Q |
130 |
atggcgcgctggttcagatacctcctccttttggttccataattggagcccccatgg |
186 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||| || |||||||||||||||| |
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| T |
7818103 |
atggcgcgttggttcaggatcctcctccttttggtttcacgattggagcccccatgg |
7818159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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