View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0376_low_17 (Length: 277)

Name: NF0376_low_17
Description: NF0376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0376_low_17
NF0376_low_17
[»] chr4 (17 HSPs)
chr4 (77-184)||(10184867-10184974)
chr4 (104-172)||(43189852-43189920)
chr4 (107-172)||(49495557-49495622)
chr4 (100-162)||(45577790-45577852)
chr4 (100-163)||(52673752-52673815)
chr4 (104-172)||(37695631-37695699)
chr4 (104-163)||(31445974-31446033)
chr4 (126-163)||(42034484-42034521)
chr4 (100-172)||(7555047-7555119)
chr4 (104-172)||(41720771-41720839)
chr4 (104-162)||(16320449-16320507)
chr4 (124-174)||(22318472-22318522)
chr4 (123-172)||(9435345-9435394)
chr4 (123-172)||(44324432-44324481)
chr4 (130-166)||(37859338-37859374)
chr4 (104-172)||(47642581-47642649)
chr4 (104-172)||(50178583-50178651)
[»] chr3 (14 HSPs)
chr3 (100-163)||(42547463-42547526)
chr3 (102-172)||(42035769-42035839)
chr3 (123-172)||(28625010-28625059)
chr3 (127-172)||(49107135-49107180)
chr3 (104-172)||(10747143-10747211)
chr3 (105-173)||(22484833-22484901)
chr3 (104-172)||(31883113-31883181)
chr3 (124-172)||(44000207-44000255)
chr3 (104-172)||(51925299-51925367)
chr3 (110-172)||(5442222-5442285)
chr3 (124-171)||(39079285-39079332)
chr3 (105-172)||(51813319-51813386)
chr3 (124-174)||(3867738-3867788)
chr3 (126-174)||(8067146-8067194)
[»] chr6 (11 HSPs)
chr6 (104-172)||(31870236-31870304)
chr6 (104-174)||(27824784-27824855)
chr6 (104-174)||(18597292-18597362)
chr6 (107-172)||(35004264-35004329)
chr6 (100-172)||(1004558-1004630)
chr6 (130-174)||(29203060-29203104)
chr6 (115-161)||(4064096-4064142)
chr6 (125-183)||(13412644-13412702)
chr6 (125-162)||(7396269-7396306)
chr6 (104-172)||(14808136-14808204)
chr6 (124-172)||(32614074-32614122)
[»] chr7 (16 HSPs)
chr7 (124-174)||(29455942-29455992)
chr7 (104-174)||(48445450-48445520)
chr7 (104-172)||(1363566-1363634)
chr7 (104-172)||(9913454-9913522)
chr7 (104-172)||(9927142-9927210)
chr7 (123-166)||(15035357-15035400)
chr7 (104-174)||(14608488-14608558)
chr7 (104-174)||(34295500-34295570)
chr7 (125-174)||(41903650-41903699)
chr7 (129-172)||(3359939-3359982)
chr7 (123-174)||(29372875-29372926)
chr7 (123-172)||(8083830-8083879)
chr7 (105-174)||(22724128-22724197)
chr7 (130-174)||(329425-329469)
chr7 (100-152)||(2048877-2048929)
chr7 (104-172)||(43368130-43368198)
[»] chr2 (6 HSPs)
chr2 (104-174)||(6896093-6896163)
chr2 (104-172)||(32766602-32766670)
chr2 (124-160)||(35170323-35170359)
chr2 (104-166)||(27462903-27462965)
chr2 (134-174)||(30712812-30712852)
chr2 (124-164)||(42202032-42202072)
[»] chr1 (18 HSPs)
chr1 (102-170)||(32785366-32785434)
chr1 (100-164)||(33937089-33937153)
chr1 (124-174)||(15540060-15540110)
chr1 (104-172)||(38663066-38663134)
chr1 (104-163)||(504572-504631)
chr1 (100-174)||(13994244-13994319)
chr1 (110-169)||(24173141-24173200)
chr1 (123-165)||(34283997-34284039)
chr1 (130-168)||(39739013-39739051)
chr1 (105-171)||(49799312-49799378)
chr1 (125-174)||(2761725-2761774)
chr1 (123-172)||(15324110-15324159)
chr1 (73-118)||(26894988-26895033)
chr1 (104-172)||(44738213-44738282)
chr1 (123-172)||(47093014-47093063)
chr1 (106-174)||(6144156-6144224)
chr1 (128-172)||(43678077-43678121)
chr1 (104-172)||(50304585-50304653)
[»] chr8 (8 HSPs)
chr8 (123-172)||(9624181-9624231)
chr8 (104-174)||(29611165-29611235)
chr8 (104-172)||(41548543-41548611)
chr8 (137-170)||(54129-54162)
chr8 (105-174)||(16485919-16485988)
chr8 (105-174)||(35225588-35225657)
chr8 (104-172)||(10466989-10467057)
chr8 (104-172)||(37618504-37618572)
[»] scaffold0650 (1 HSPs)
scaffold0650 (101-174)||(1744-1817)
[»] chr5 (4 HSPs)
chr5 (109-174)||(31644376-31644441)
chr5 (104-169)||(42013441-42013506)
chr5 (104-172)||(4689801-4689869)
chr5 (123-155)||(29788576-29788608)
[»] scaffold0062 (1 HSPs)
scaffold0062 (130-174)||(3729-3773)
[»] scaffold0054 (1 HSPs)
scaffold0054 (126-155)||(19854-19883)


Alignment Details
Target: chr4 (Bit Score: 92; Significance: 9e-45; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 77 - 184
Target Start/End: Complemental strand, 10184974 - 10184867
Alignment:
Q  77 atctactaataggtaagtaccgcacaaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatggt 176  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |    
T  10184974 atctactagtaggtaagtactgcacaaaacaacacaatacaaggtggaacagcacatgacaaacttttatggtattgaacaattttttgtcttatatgat 10184875  T
Q  177 attttgta 184  Q
    ||||||||    
T  10184874 attttgta 10184867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 43189920 - 43189852
Alignment:
Q  104 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 172  Q
    |||||||||||||||||  || |||||||||| ||||||||||||||||||| ||||||||||||||||    
T  43189920 aacaacacaatacaaggaagagcaacacatgataaacttttatggtattgaataattttttgtcttata 43189852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 107 - 172
Target Start/End: Original strand, 49495557 - 49495622
Alignment:
Q  107 aacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 172  Q
    ||||||||| ||||| ||||||||||| ||||||||||||| |||||||||||||||| |||||||    
T  49495557 aacacaatataaggtagaacaacacataacaaacttttatgatattgaacaattttttatcttata 49495622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 162
Target Start/End: Complemental strand, 45577852 - 45577790
Alignment:
Q  100 acaaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaatttt 162  Q
    |||||||||||||| | ||||| ||||||||||||||||| ||||||||||||||| ||||||    
T  45577852 acaaaacaacacaacataaggttgaacaacacatgacaaagttttatggtattgaataatttt 45577790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 163
Target Start/End: Original strand, 52673752 - 52673815
Alignment:
Q  100 acaaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttt 163  Q
    |||||||||||||| ||||||  ||||  ||||||||||||||||||||||||||| |||||||    
T  52673752 acaaaacaacacaacacaaggcagaactgcacatgacaaacttttatggtattgaataattttt 52673815  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 37695699 - 37695631
Alignment:
Q  104 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 172  Q
    |||||||||||||||||  ||||| |||| |||||| |||||||| |||||| |||||||||| |||||    
T  37695699 aacaacacaatacaagggagaacagcacaagacaaatttttatggcattgaataattttttgttttata 37695631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 163
Target Start/End: Complemental strand, 31446033 - 31445974
Alignment:
Q  104 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttt 163  Q
    |||||||||| |||| || ||| ||||||||||||||||||||||||||| | |||||||    
T  31446033 aacaacacaacacaaagtagaaaaacacatgacaaacttttatggtattggataattttt 31445974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 42034521 - 42034484
Alignment:
Q  126 caacacatgacaaacttttatggtattgaacaattttt 163  Q
    |||||||||||||||||||||||||||||| |||||||    
T  42034521 caacacatgacaaacttttatggtattgaataattttt 42034484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 172
Target Start/End: Complemental strand, 7555119 - 7555047
Alignment:
Q  100 acaaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 172  Q
    |||||||||||||| |||||   ||||| |||| |||||| |||||||| |||||| |||||||||| |||||    
T  7555119 acaaaacaacacaacacaagacagaacatcacacgacaaatttttatggcattgaataattttttgttttata 7555047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 41720771 - 41720839
Alignment:
Q  104 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 172  Q
    ||||||| || |||| || ||||||||||||||||||||| ||| ||||| | ||||||| ||||||||    
T  41720771 aacaacataacacaaagtagaacaacacatgacaaactttaatgatattgtataatttttagtcttata 41720839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 162
Target Start/End: Original strand, 16320449 - 16320507
Alignment:
Q  104 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaatttt 162  Q
    |||||||||||| ||||  |||||||||| |||||| |||||||| |||||| ||||||    
T  16320449 aacaacacaatagaagggagaacaacacaagacaaatttttatggcattgaataatttt 16320507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 174
Target Start/End: Complemental strand, 22318522 - 22318472
Alignment:
Q  124 aacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 174  Q
    |||||||||||||||| ||||||| ||||||| ||||| |||| |||||||    
T  22318522 aacaacacatgacaaatttttatgatattgaataatttcttgttttatatg 22318472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 9435345 - 9435394
Alignment:
Q  123 gaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 172  Q
    |||||||||| |||||||||||||| |||||||  |||||| ||||||||    
T  9435345 gaacaacacacgacaaacttttatgatattgaattatttttggtcttata 9435394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 44324481 - 44324432
Alignment:
Q  123 gaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 172  Q
    ||||| ||||||||||| |||||||| |||||| |||||||||| |||||    
T  44324481 gaacagcacatgacaaatttttatggcattgaataattttttgttttata 44324432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 37859374 - 37859338
Alignment:
Q  130 acatgacaaacttttatggtattgaacaattttttgt 166  Q
    ||||||||||||| ||| |||||||||||||||||||    
T  37859374 acatgacaaacttgtattgtattgaacaattttttgt 37859338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 47642649 - 47642581
Alignment:
Q  104 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 172  Q
    |||||||||||||||||  ||||| |||| || ||| |||||||  |||||| |||||||||| |||||    
T  47642649 aacaacacaatacaagggagaacagcacaggataaatttttatgacattgaataattttttgttttata 47642581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 50178651 - 50178583
Alignment:
Q  104 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 172  Q
    |||| ||||||||||||  ||||| |||| |||||| |||||||  |||||| |||||||||| |||||    
T  50178651 aacatcacaatacaagggagaacatcacaggacaaatttttatgacattgaataattttttgttttata 50178583  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 42547526 - 42547463
Alignment:
Q  100 acaaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttt 163  Q
    |||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||| |||||||    
T  42547526 acaaaacaacacgatacaaggtagaacaacacatgacaaacttttatgatattgaataattttt 42547463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 102 - 172
Target Start/End: Complemental strand, 42035839 - 42035769
Alignment:
Q  102 aaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 172  Q
    |||||||||||  | ||||| ||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  42035839 aaaacaacacagaataaggtagaacaacacttgacaaacttttatggtattgaacaattttttctcttata 42035769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 28625059 - 28625010
Alignment:
Q  123 gaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 172  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  28625059 gaacaacacaagacaaacttttatggtattgaataattttttgtcttata 28625010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 172
Target Start/End: Original strand, 49107135 - 49107180
Alignment:
Q  127 aacacatgacaaacttttatggtattgaacaattttttgtcttata 172  Q
    |||||||||||||||| |||| ||| ||||||||||||||||||||    
T  49107135 aacacatgacaaacttatatgatatcgaacaattttttgtcttata 49107180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 10747143 - 10747211
Alignment:
Q  104 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 172  Q
    |||||||||||||||||  ||||| |||| |||||| |||||||  |||||| |||||||||| |||||    
T  10747143 aacaacacaatacaagggagaacagcacaagacaaatttttatgacattgaataattttttgttttata 10747211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 22484901 - 22484833
Alignment:
Q  105 acaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatat 173  Q
    ||||||||| | ||||| ||||| |||| |||||| ||||||||||||||| |||||| ||| ||||||    
T  22484901 acaacacaacataaggtagaacagcacaagacaaatttttatggtattgaataattttctgtattatat 22484833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 31883181 - 31883113
Alignment:
Q  104 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 172  Q
    |||| ||||||||||||  |||||||||| |||||| |||||||  |||||| |||||||||| |||||    
T  31883181 aacagcacaatacaagggagaacaacacaggacaaatttttatgacattgaataattttttgttttata 31883113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 172
Target Start/End: Original strand, 44000207 - 44000255
Alignment:
Q  124 aacaacacatgacaaacttttatggtattgaacaattttttgtcttata 172  Q
    ||||| ||| |||||||||||||||||||||| ||||||| ||||||||    
T  44000207 aacaatacaagacaaacttttatggtattgaataatttttggtcttata 44000255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 51925367 - 51925299
Alignment:
Q  104 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 172  Q
    |||| ||||| ||||||  ||||| ||||||||||| |||||||| |||||| |||||||||| |||||    
T  51925367 aacagcacaacacaaggcagaacagcacatgacaaatttttatggcattgaataattttttgttttata 51925299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 172
Target Start/End: Original strand, 5442222 - 5442285
Alignment:
Q  110 acaatacaaggtggaacaacacatgacaaa-cttttatggtattgaacaattttttgtcttata 172  Q
    ||||||||||||  ||||||||||||||||  |||||||| |||||| |||||||||| |||||    
T  5442222 acaatacaaggtataacaacacatgacaaattttttatggcattgaataattttttgttttata 5442285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 171
Target Start/End: Complemental strand, 39079332 - 39079285
Alignment:
Q  124 aacaacacatgacaaacttttatggtattgaacaattttttgtcttat 171  Q
    ||||||||||||||||||||||| |||||| | |||||||| ||||||    
T  39079332 aacaacacatgacaaacttttattgtattggataattttttatcttat 39079285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 172
Target Start/End: Original strand, 51813319 - 51813386
Alignment:
Q  105 acaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 172  Q
    ||||||||| ||||||  ||||||||||||| |||||||||| ||  |  ||||||||||||||||||    
T  51813319 acaacacaacacaaggcagaacaacacatgataaacttttatagtccttgacaattttttgtcttata 51813386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 174
Target Start/End: Complemental strand, 3867788 - 3867738
Alignment:
Q  124 aacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 174  Q
    |||||||||||||||  ||||||||||||||| ||||| |||| |||||||    
T  3867788 aacaacacatgacaagtttttatggtattgaataatttcttgttttatatg 3867738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 8067194 - 8067146
Alignment:
Q  126 caacacatgacaaacttttatggtattgaacaattttttgtcttatatg 174  Q
    |||||||||||| |||||||||||||||||  ||||||  |||||||||    
T  8067194 caacacatgacatacttttatggtattgaatgatttttgatcttatatg 8067146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 31870304 - 31870236
Alignment:
Q  104 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 172  Q
    |||||||||||| ||||  ||||||||||||||||| |||||||| |||||| |||||||||| |||||    
T  31870304 aacaacacaatataagggagaacaacacatgacaaatttttatggcattgaataattttttgttttata 31870236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 104 - 174
Target Start/End: Complemental strand, 27824855 - 27824784
Alignment:
Q  104 aacaacacaatacaaggt-ggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 174  Q
    |||| ||||| ||||||| ||||||| |||||||||||||||||||||||||| |||||||  |||||||||    
T  27824855 aacatcacaacacaaggttggaacaatacatgacaaacttttatggtattgaataatttttgatcttatatg 27824784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 174
Target Start/End: Complemental strand, 18597362 - 18597292
Alignment:
Q  104 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 174  Q
    |||||||||| || |||| ||||||||||| | ||| ||||||||||||||| |||||||||| |||||||    
T  18597362 aacaacacaacactaggtagaacaacacataataaatttttatggtattgaataattttttgttttatatg 18597292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 107 - 172
Target Start/End: Complemental strand, 35004329 - 35004264
Alignment:
Q  107 aacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 172  Q
    ||||||||||||||  ||||||||||| ||||||||||||| ||||||| | ||||| || |||||    
T  35004329 aacacaatacaaggcagaacaacacataacaaacttttatgatattgaatagtttttggtattata 35004264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 172
Target Start/End: Complemental strand, 1004630 - 1004558
Alignment:
Q  100 acaaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 172  Q
    |||||||||||||| | |||   ||||| |||||||||||||| ||  |||||||||| ||||||||||||||    
T  1004630 acaaaacaacacaacataagaaagaacatcacatgacaaacttataatgtattgaacatttttttgtcttata 1004558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 29203104 - 29203060
Alignment:
Q  130 acatgacaaacttttatggtattgaacaattttttgtcttatatg 174  Q
    |||||||||| ||||||| |||||||||||| |||||||||||||    
T  29203104 acatgacaaatttttatgatattgaacaattatttgtcttatatg 29203060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 115 - 161
Target Start/End: Complemental strand, 4064142 - 4064096
Alignment:
Q  115 acaaggtggaacaacacatgacaaacttttatggtattgaacaattt 161  Q
    ||||||| |||||| |||||||||||||||||| ||||||| |||||    
T  4064142 acaaggtagaacaatacatgacaaacttttatgatattgaataattt 4064096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 183
Target Start/End: Original strand, 13412644 - 13412702
Alignment:
Q  125 acaacacatgacaaacttttatggtattgaacaattttttgtcttatatggtattttgt 183  Q
    ||||||||||||||| |||||| |||||||| |||||||  ||||||||| | ||||||    
T  13412644 acaacacatgacaaatttttatagtattgaataatttttcatcttatatgattttttgt 13412702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 162
Target Start/End: Complemental strand, 7396306 - 7396269
Alignment:
Q  125 acaacacatgacaaacttttatggtattgaacaatttt 162  Q
    ||||||||||||||| ||||||||||||||| ||||||    
T  7396306 acaacacatgacaaatttttatggtattgaataatttt 7396269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 14808204 - 14808136
Alignment:
Q  104 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 172  Q
    |||||||||||||||||  ||| | |||| |||||| |||||||| |||||| ||||||| || |||||    
T  14808204 aacaacacaatacaagggagaatagcacaggacaaatttttatggaattgaataatttttagttttata 14808136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 172
Target Start/End: Complemental strand, 32614122 - 32614074
Alignment:
Q  124 aacaacacatgacaaacttttatggtattgaacaattttttgtcttata 172  Q
    ||||||| |||||||||||||||||||||  | ||||||| ||||||||    
T  32614122 aacaacatatgacaaacttttatggtattatataatttttggtcttata 32614074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 124 - 174
Target Start/End: Complemental strand, 29455992 - 29455942
Alignment:
Q  124 aacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 174  Q
    |||||||||||||||||||||||||||||||| ||| ||| ||||||||||    
T  29455992 aacaacacatgacaaacttttatggtattgaataatatttggtcttatatg 29455942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 174
Target Start/End: Original strand, 48445450 - 48445520
Alignment:
Q  104 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 174  Q
    |||||||||| ||||||   |||||||||||||||| ||||||||||||||| ||||| |||| |||||||    
T  48445450 aacaacacaacacaaggcataacaacacatgacaaatttttatggtattgaataatttcttgttttatatg 48445520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 1363566 - 1363634
Alignment:
Q  104 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 172  Q
    |||||||||  | ||||| ||||||||||||||||| |||||||| |||||| |||||||||| |||||    
T  1363566 aacaacacatcagaaggtagaacaacacatgacaaatttttatggcattgaataattttttgttttata 1363634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 9913454 - 9913522
Alignment:
Q  104 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 172  Q
    |||||||||||||||||  ||||| ||||||||||| |||||||| |||||| ||||||| || |||||    
T  9913454 aacaacacaatacaagggagaacaccacatgacaaatttttatggaattgaataatttttagttttata 9913522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 9927142 - 9927210
Alignment:
Q  104 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 172  Q
    |||||||||||||||||  ||||| ||||||||||| |||||||| |||||| ||||||| || |||||    
T  9927142 aacaacacaatacaagggagaacaccacatgacaaatttttatggaattgaataatttttagttttata 9927210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 166
Target Start/End: Complemental strand, 15035400 - 15035357
Alignment:
Q  123 gaacaacacatgacaaacttttatggtattgaacaattttttgt 166  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||    
T  15035400 gaacaacacatgacaaatttttatggtattgaataattttttgt 15035357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 174
Target Start/End: Complemental strand, 14608558 - 14608488
Alignment:
Q  104 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 174  Q
    |||||||||| ||||||   ||||||| | ||||||||||||||||||| ||||||||||  |||||||||    
T  14608558 aacaacacaacacaaggcataacaacataggacaaacttttatggtattaaacaatttttgatcttatatg 14608488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 174
Target Start/End: Complemental strand, 34295570 - 34295500
Alignment:
Q  104 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 174  Q
    |||||||||||||||||  ||||| |||| |||||| |||||||  |||||| |||||||||| |||||||    
T  34295570 aacaacacaatacaagggagaacagcacaagacaaatttttatgacattgaataattttttgttttatatg 34295500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 41903699 - 41903650
Alignment:
Q  125 acaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 174  Q
    ||||||||| | ||||||||||||| |||||||||||||||| |||||||    
T  41903699 acaacacatcataaacttttatggtcttgaacaattttttgttttatatg 41903650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 172
Target Start/End: Complemental strand, 3359982 - 3359939
Alignment:
Q  129 cacatgacaaacttttatggtattgaacaattttttgtcttata 172  Q
    ||||||| ||||||||||| ||||||| ||||||||||||||||    
T  3359982 cacatgataaacttttatgatattgaataattttttgtcttata 3359939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 174
Target Start/End: Complemental strand, 29372926 - 29372875
Alignment:
Q  123 gaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 174  Q
    |||||| ||| ||||||||||||||||||| || ||||||| ||||||||||    
T  29372926 gaacaatacaagacaaacttttatggtattaaataatttttggtcttatatg 29372875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 8083879 - 8083830
Alignment:
Q  123 gaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 172  Q
    |||||||| || |||||||||| |||||||| | ||||||||||||||||    
T  8083879 gaacaacatataacaaacttttgtggtattgcataattttttgtcttata 8083830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 22724197 - 22724128
Alignment:
Q  105 acaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 174  Q
    ||||||||| | ||||  |||||||||| || ||| ||||||||||||||| |||||| ||| |||||||    
T  22724197 acaacacaacataaggcagaacaacacaagataaatttttatggtattgaataattttctgtattatatg 22724128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 329425 - 329469
Alignment:
Q  130 acatgacaaacttttatggtattgaacaattttttgtcttatatg 174  Q
    |||||||||| ||||||||||||||| ||||| |||| |||||||    
T  329425 acatgacaaatttttatggtattgaataatttcttgttttatatg 329469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 2048877 - 2048929
Alignment:
Q  100 acaaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtatt 152  Q
    |||||||||||||| ||||||  ||||||||||||| |||||  |||||||||    
T  2048877 acaaaacaacacaacacaaggcagaacaacacatgataaactcgtatggtatt 2048929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 43368130 - 43368198
Alignment:
Q  104 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 172  Q
    |||| ||||||||||||  ||||| ||||||||||| ||||||   |||||| |||||||||| |||||    
T  43368130 aacagcacaatacaagggagaacagcacatgacaaatttttatcacattgaataattttttgttttata 43368198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 104 - 174
Target Start/End: Original strand, 6896093 - 6896163
Alignment:
Q  104 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 174  Q
    |||||||||| ||||||   |||||||||||||||| ||||||||||||||| ||||| |||| |||||||    
T  6896093 aacaacacaacacaaggcataacaacacatgacaaatttttatggtattgaataatttcttgttttatatg 6896163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 32766670 - 32766602
Alignment:
Q  104 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 172  Q
    ||||||||||| |||||  |||||||||| |||||| |||||||| |||||| |||||||||| |||||    
T  32766670 aacaacacaatgcaagggagaacaacacaggacaaatttttatggcattgaataattttttgttttata 32766602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 35170359 - 35170323
Alignment:
Q  124 aacaacacatgacaaacttttatggtattgaacaatt 160  Q
    |||||||||||||||||||||||||| ||||||||||    
T  35170359 aacaacacatgacaaacttttatggtgttgaacaatt 35170323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 166
Target Start/End: Complemental strand, 27462965 - 27462903
Alignment:
Q  104 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgt 166  Q
    |||| ||||| ||||||| ||||||||||||||||| || ||||  |||||| ||||||||||    
T  27462965 aacagcacaacacaaggtagaacaacacatgacaaatttatatgacattgaataattttttgt 27462903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 134 - 174
Target Start/End: Original strand, 30712812 - 30712852
Alignment:
Q  134 gacaaacttttatggtattgaacaattttttgtcttatatg 174  Q
    |||||| ||||||||||||||| |||||||||| |||||||    
T  30712812 gacaaatttttatggtattgaataattttttgttttatatg 30712852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 164
Target Start/End: Original strand, 42202032 - 42202072
Alignment:
Q  124 aacaacacatgacaaacttttatggtattgaacaatttttt 164  Q
    |||||||| |||||| |||||||||||||||| ||||||||    
T  42202032 aacaacacttgacaaccttttatggtattgaataatttttt 42202072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 102 - 170
Target Start/End: Complemental strand, 32785434 - 32785366
Alignment:
Q  102 aaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtctta 170  Q
    ||||||| | |||||||||  |||||||||| ||||||||||||||||| |||| ||||||| ||||||    
T  32785434 aaaacaatataatacaaggcagaacaacacaagacaaacttttatggtaatgaataatttttggtctta 32785366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 33937153 - 33937089
Alignment:
Q  100 acaaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaatttttt 164  Q
    |||||||| |||| || ||||| |||||||||| |||||||||||||||||||  ||||||||||    
T  33937153 acaaaacatcacactataaggtagaacaacacaagacaaacttttatggtattagacaatttttt 33937089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 174
Target Start/End: Complemental strand, 15540110 - 15540060
Alignment:
Q  124 aacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 174  Q
    |||||||||||||||  ||||||||||||||| |||||||||| |||||||    
T  15540110 aacaacacatgacaagtttttatggtattgaataattttttgttttatatg 15540060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 38663066 - 38663134
Alignment:
Q  104 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 172  Q
    |||||||||||| ||||  |||||||||| |||||| |||||||  |||||| |||||||||| |||||    
T  38663066 aacaacacaatataagggagaacaacacaggacaaatttttatgacattgaataattttttgttttata 38663134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 104 - 163
Target Start/End: Complemental strand, 504631 - 504572
Alignment:
Q  104 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttt 163  Q
    |||||||||| |||| || ||| |||||||| |||| ||||||||||||| |||||||||    
T  504631 aacaacacaacacaaagtagaataacacatgtcaaatttttatggtattggacaattttt 504572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 174
Target Start/End: Complemental strand, 13994319 - 13994244
Alignment:
Q  100 acaaaacaacacaatacaaggtggaacaacacatgacaaacttt-tatggtattgaacaattttttgtcttatatg 174  Q
    |||| ||||||||||||||||  |||||||||| |||||| ||| |||| ||||||| |||||| ||| |||||||    
T  13994319 acaacacaacacaatacaaggcagaacaacacaagacaaattttgtatgatattgaataattttatgttttatatg 13994244  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 110 - 169
Target Start/End: Complemental strand, 24173200 - 24173141
Alignment:
Q  110 acaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtctt 169  Q
    |||||||||  | ||||||||||||||||||||||| ||||||  |||| ||||||||||    
T  24173200 acaatacaaaatagaacaacacatgacaaacttttaaggtatttgacaactttttgtctt 24173141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 165
Target Start/End: Complemental strand, 34284039 - 34283997
Alignment:
Q  123 gaacaacacatgacaaacttttatggtattgaacaattttttg 165  Q
    |||||||||| |||||||||||||||||||||| || ||||||    
T  34284039 gaacaacacaagacaaacttttatggtattgaataagtttttg 34283997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 168
Target Start/End: Complemental strand, 39739051 - 39739013
Alignment:
Q  130 acatgacaaacttttatggtattgaacaattttttgtct 168  Q
    |||||| ||| ||||||||||||||||||||||||||||    
T  39739051 acatgataaatttttatggtattgaacaattttttgtct 39739013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 171
Target Start/End: Original strand, 49799312 - 49799378
Alignment:
Q  105 acaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttat 171  Q
    ||||| ||||||||| | ||||| |||| |||||||||||||| ||||||| ||| ||| |||||||    
T  49799312 acaactcaatacaagctagaacaccacaagacaaacttttatgatattgaataatatttggtcttat 49799378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 2761774 - 2761725
Alignment:
Q  125 acaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 174  Q
    ||||||||||||| |||||||| |||||||| ||||||| || |||||||    
T  2761774 acaacacatgacagacttttatagtattgaataatttttggttttatatg 2761725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 15324110 - 15324159
Alignment:
Q  123 gaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 172  Q
    ||||||||||||| || ||||||||||| | || ||||||||||||||||    
T  15324110 gaacaacacatgaaaagcttttatggtaataaataattttttgtcttata 15324159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 118
Target Start/End: Original strand, 26894988 - 26895033
Alignment:
Q  73 tttgatctactaataggtaagtaccgcacaaaacaacacaatacaa 118  Q
    |||||||| |||| |||||||||||| |||||||||||||| ||||    
T  26894988 tttgatctgctaaaaggtaagtaccgaacaaaacaacacaagacaa 26895033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 44738282 - 44738213
Alignment:
Q  104 aacaacacaatacaaggtggaacaacacatgacaaa-cttttatggtattgaacaattttttgtcttata 172  Q
    ||||| |||| ||||||| |||||||||||||||||  |||||||| |||||  |||||||||| |||||    
T  44738282 aacaatacaacacaaggtagaacaacacatgacaaattttttatggcattgagtaattttttgttttata 44738213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 123 - 172
Target Start/End: Complemental strand, 47093063 - 47093014
Alignment:
Q  123 gaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 172  Q
    ||||||||||||||||| ||||||  ||||||| ||||||||| ||||||    
T  47093063 gaacaacacatgacaaatttttataatattgaataattttttgccttata 47093014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 174
Target Start/End: Complemental strand, 6144224 - 6144156
Alignment:
Q  106 caacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 174  Q
    |||||||| | ||||  ||||| |||| |||||| ||||||||||||||| |||||| ||| |||||||    
T  6144224 caacacaacataaggcagaacatcacaagacaaatttttatggtattgaataattttctgttttatatg 6144156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 172
Target Start/End: Complemental strand, 43678121 - 43678077
Alignment:
Q  128 acacatgacaaacttttatggtattgaacaattttttgtcttata 172  Q
    |||||| |||| | |||||||||||| ||||||||||||||||||    
T  43678121 acacataacaagcctttatggtattgtacaattttttgtcttata 43678077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 50304585 - 50304653
Alignment:
Q  104 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 172  Q
    |||| ||||||||||||  ||||| |||| |||||| |||||||  |||||| |||||||||| |||||    
T  50304585 aacagcacaatacaagggagaacagcacaggacaaatttttatgacattgaataattttttgttttata 50304653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 9624181 - 9624231
Alignment:
Q  123 gaacaacacatgacaaacttttatggtattgaacaa-ttttttgtcttata 172  Q
    ||||||||||||||||| ||||||||||||||| || ||||||||||||||    
T  9624181 gaacaacacatgacaaatttttatggtattgaataatttttttgtcttata 9624231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 174
Target Start/End: Complemental strand, 29611235 - 29611165
Alignment:
Q  104 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 174  Q
    |||||||||| ||||||   ||||||||| |||||| ||||||||||||||| ||||| |||| |||||||    
T  29611235 aacaacacaacacaaggcataacaacacaggacaaatttttatggtattgaataatttcttgttttatatg 29611165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 41548543 - 41548611
Alignment:
Q  104 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 172  Q
    |||||||||||||||||  ||||| |||| |||||| |||||||  |||||| |||||||||| |||||    
T  41548543 aacaacacaatacaagggagaacatcacaggacaaatttttatgacattgaataattttttgttttata 41548611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 170
Target Start/End: Original strand, 54129 - 54162
Alignment:
Q  137 aaacttttatggtattgaacaattttttgtctta 170  Q
    ||||||||||||||||||| ||||||||||||||    
T  54129 aaacttttatggtattgaataattttttgtctta 54162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 174
Target Start/End: Complemental strand, 16485988 - 16485919
Alignment:
Q  105 acaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 174  Q
    ||||||||||| ||||  ||||| ||||  ||||| ||||||||||||||| |||||| ||| |||||||    
T  16485988 acaacacaatataaggcagaacagcacaaaacaaatttttatggtattgaataattttctgtattatatg 16485919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 174
Target Start/End: Original strand, 35225588 - 35225657
Alignment:
Q  105 acaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 174  Q
    ||||||||| |||||   |||||||||| |||||| ||||||||||||||| |||||  ||| |||||||    
T  35225588 acaacacaacacaagacagaacaacacaagacaaatttttatggtattgaataatttcctgttttatatg 35225657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 172
Target Start/End: Original strand, 10466989 - 10467057
Alignment:
Q  104 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 172  Q
    |||||||||||||||||  ||||| |||| |||||| |||||||  || ||| |||||||||| |||||    
T  10466989 aacaacacaatacaagggagaacagcacaggacaaatttttatgacatagaataattttttgttttata 10467057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 37618572 - 37618504
Alignment:
Q  104 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 172  Q
    |||| ||||| ||||||  ||||| |||||||||||  ||||||| |||||| |||||||||| |||||    
T  37618572 aacagcacaacacaaggcagaacagcacatgacaaatgtttatggcattgaataattttttgttttata 37618504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0650 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0650
Description:

Target: scaffold0650; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 174
Target Start/End: Complemental strand, 1817 - 1744
Alignment:
Q  101 caaaacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 174  Q
    ||||||| ||||| |||||   ||||||||||  ||||| ||||||||||||||| |||||||||| |||||||    
T  1817 caaaacagcacaacacaagagagaacaacacagaacaaatttttatggtattgaataattttttgttttatatg 1744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 109 - 174
Target Start/End: Original strand, 31644376 - 31644441
Alignment:
Q  109 cacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttatatg 174  Q
    ||||||||||||| |||||||||| |||||| |||||||  |||||| |||||| ||| |||||||    
T  31644376 cacaatacaaggtagaacaacacaagacaaatttttatgacattgaataattttatgttttatatg 31644441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 104 - 169
Target Start/End: Original strand, 42013441 - 42013506
Alignment:
Q  104 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtctt 169  Q
    |||||||||||| || || |||||| | |||| ||||||||||| ||||||||||||||| |||||    
T  42013441 aacaacacaataaaaagtagaacaatagatgataaacttttatgatattgaacaatttttggtctt 42013506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 4689869 - 4689801
Alignment:
Q  104 aacaacacaatacaaggtggaacaacacatgacaaacttttatggtattgaacaattttttgtcttata 172  Q
    |||||||||| | ||||  ||||||||||||||||| |||||||  |||||| |||||||||| |||||    
T  4689869 aacaacacaacataaggcagaacaacacatgacaaatttttatgacattgaataattttttgttttata 4689801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 155
Target Start/End: Complemental strand, 29788608 - 29788576
Alignment:
Q  123 gaacaacacatgacaaacttttatggtattgaa 155  Q
    ||||||||||||| |||||||||||||||||||    
T  29788608 gaacaacacatgataaacttttatggtattgaa 29788576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 174
Target Start/End: Complemental strand, 3773 - 3729
Alignment:
Q  130 acatgacaaacttttatggtattgaacaattttttgtcttatatg 174  Q
    |||||||||||||||||| ||||||| |||||||| |||||||||    
T  3773 acatgacaaacttttatgatattgaataattttttatcttatatg 3729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 126 - 155
Target Start/End: Original strand, 19854 - 19883
Alignment:
Q  126 caacacatgacaaacttttatggtattgaa 155  Q
    ||||||||||||||||||||||||||||||    
T  19854 caacacatgacaaacttttatggtattgaa 19883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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