View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0376_low_19 (Length: 267)
Name: NF0376_low_19
Description: NF0376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0376_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 31 - 232
Target Start/End: Complemental strand, 12475258 - 12475057
Alignment:
| Q |
31 |
agacgagatatccagagggaatgaggtgcagccaacagaaaatggatgggacaataatactcaacccctggatcaactaacagagcagatgggtcttctt |
130 |
Q |
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| T |
12475258 |
agacgagatatccagagggaatgaggtgcagccaacagaaaatggatgggacaataatactcaacccctggatcaactaacagagcagatgggtcttctt |
12475159 |
T |
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| Q |
131 |
tcctctgatgccaaaagaatttaatcatctatgaaatttttattgacctttcatactgtccaaggtaatccctgtcccaaaaaatacacaagtgatgatg |
230 |
Q |
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| T |
12475158 |
tcttctgatgccaaaagaatttaatcatctatgaaatttttattgacctttcatactgtccaaggtaatctctgtcccaaaaaatacacaagtgatgatg |
12475059 |
T |
|
| Q |
231 |
tc |
232 |
Q |
| |
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|| |
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| T |
12475058 |
tc |
12475057 |
T |
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