View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0376_low_21 (Length: 266)
Name: NF0376_low_21
Description: NF0376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0376_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 3 - 168
Target Start/End: Original strand, 1842660 - 1842825
Alignment:
| Q |
3 |
accaaaaactttgacgagaatttaatcattggcaaaggtggttttggtactgttttcaaaggatttctagatgataaaagaattgttgctatcaaaaagt |
102 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
1842660 |
accaaagactttgacgagaatttaatcattggcaaaggtggttttggtactgtttacaaaggatttctagatgataaaagaatcgttgctatcaaaaaat |
1842759 |
T |
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| Q |
103 |
caaaaataatagatagaagccaaatcaatcaattcatcaatgaggtagttgttctctctcaaataa |
168 |
Q |
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| T |
1842760 |
caaaaataatagatagaagccaaatcaatcaattcattaatgaggtaattattctctctcaaataa |
1842825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 1868267 - 1868434
Alignment:
| Q |
1 |
caaccaaaaactttgacgagaatttaatcattggcaaaggtggttttggtactgttttcaaaggatttctagatgataaaagaattgttgctatcaaaaa |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||||||| |
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| T |
1868267 |
caaccaaaaacttcgacgagaatttaatcattggcaaaggtggttttggtaccgttttcaaaggacttctagatgataaaagaatcgttgctatcaaaaa |
1868366 |
T |
|
| Q |
101 |
gtcaaaaataatagatagaagccaaatcaatcaattcatcaatgaggtagttgttctctctcaaataa |
168 |
Q |
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| T |
1868367 |
atcaaaaataatagatagaagccaaatcgatcaattcattaatgaggtggttgttctctctcaaataa |
1868434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 24 - 168
Target Start/End: Original strand, 1856695 - 1856839
Alignment:
| Q |
24 |
ttaatcattggcaaaggtggttttggtactgttttcaaaggatttctagatgataaaagaattgttgctatcaaaaagtcaaaaataatagatagaagcc |
123 |
Q |
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| T |
1856695 |
ttaatcataggtaaaggaggttttggtacagtttacaaaggggaacttgatgataatagaattgttgctatcaaaaagtctaaaacaatagacaaaagcc |
1856794 |
T |
|
| Q |
124 |
aaatcaatcaattcatcaatgaggtagttgttctctctcaaataa |
168 |
Q |
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| T |
1856795 |
aaattgaacaattcattaatgaggtggatgttgtctctcaaataa |
1856839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 168
Target Start/End: Complemental strand, 1816364 - 1816205
Alignment:
| Q |
9 |
aactttgacgagaatttaatcattggcaaaggtggttttggtactgttttcaaaggatttctagatgataaaagaattgttgctatcaaaaagtcaaaaa |
108 |
Q |
| |
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|||||||| |||| |||||||| || | ||| ||||||||||| ||||||||||| || |||||||| |||||||| |||||||||||||| |||| |
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| T |
1816364 |
aactttgatgagagcttaatcataggtagaggaggttttggtacagttttcaaaggggaacttgatgataatagaattgtggctatcaaaaagtccaaaa |
1816265 |
T |
|
| Q |
109 |
taatagatagaagccaaatcaatcaattcatcaatgaggtagttgttctctctcaaataa |
168 |
Q |
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| T |
1816264 |
caatagacgaaagccaaattgaacaattcattaacgaggtggatgttgtctctcaaataa |
1816205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 168
Target Start/End: Complemental strand, 9156283 - 9156118
Alignment:
| Q |
3 |
accaaaaactttgacgagaatttaatcattggcaaaggtggttttggtactgttttcaaaggatttctagatgataaaagaattgttgctatcaaaaagt |
102 |
Q |
| |
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|||||||||| || || || ||||||||||||| ||| ||||||||||| |||||||||||| || || || || | ||| |||||| | ||||| | |
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| T |
9156283 |
accaaaaactacgatgaaaacttaatcattggcagaggaggttttggtacagttttcaaaggagttttacccgacaacaaaatcgttgctgtaaaaaaat |
9156184 |
T |
|
| Q |
103 |
caaaaataatagatagaagccaaatcaatcaattcatcaatgaggtagttgttctctctcaaataa |
168 |
Q |
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|||||||||||||| || |||||| | || || || |||||||||||||| || || ||||||| |
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| T |
9156183 |
caaaaataatagatgcaaatcaaatcgagcagtttattaatgaggtagttgtcctatcccaaataa |
9156118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 3 - 168
Target Start/End: Complemental strand, 9219104 - 9218939
Alignment:
| Q |
3 |
accaaaaactttgacgagaatttaatcattggcaaaggtggttttggtactgttttcaaaggatttctagatgataaaagaattgttgctatcaaaaagt |
102 |
Q |
| |
|
|||||||||| ||||| | |||||||| || | ||| ||||||||||| |||||||||||| || | ||||| | |||||| ||| ||||||||| |
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| T |
9219104 |
accaaaaactacgacgaaagcttaatcatcggtagaggaggttttggtacagttttcaaaggaattttgcccgataacaaaattgtcgctgtcaaaaagt |
9219005 |
T |
|
| Q |
103 |
caaaaataatagatagaagccaaatcaatcaattcatcaatgaggtagttgttctctctcaaataa |
168 |
Q |
| |
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| T |
9219004 |
ccaaaataatagacgcaaatcagatcgagcaattcattaatgaggtagttgttctgtcccaaataa |
9218939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 168
Target Start/End: Original strand, 9118278 - 9118422
Alignment:
| Q |
24 |
ttaatcattggcaaaggtggttttggtactgttttcaaaggatttctagatgataaaagaattgttgctatcaaaaagtcaaaaataatagatagaagcc |
123 |
Q |
| |
|
||||||||||| | ||| ||||| ||||| ||||||||||| || || ||||| ||||| || ||| |||||||||| | ||||||||| || | |
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| T |
9118278 |
ttaatcattggaagaggaggtttcggtacaattttcaaaggagttttacccgataacagaatcgtggctgtcaaaaagtccagaataatagacgcaaatc |
9118377 |
T |
|
| Q |
124 |
aaatcaatcaattcatcaatgaggtagttgttctctctcaaataa |
168 |
Q |
| |
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||||| | |||||||| |||||||||||| |||| || ||||||| |
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| T |
9118378 |
aaatcgagcaattcattaatgaggtagttattctgtcccaaataa |
9118422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 37567622 - 37567761
Alignment:
| Q |
9 |
aactttgacgagaatttaatcattggcaaaggtggttttggtactgttttcaaaggatttctagatgataaaagaattgttgctatcaaaaagtcaaaaa |
108 |
Q |
| |
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|||||||| ||||| |||| ||| || | ||| ||||||||||| ||||||||||| ||||||||||| |||| ||||||||||||||| || |||| |
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| T |
37567622 |
aactttgatgagaacttaaccataggtagaggaggttttggtacagttttcaaagggaaactagatgataatagaactgttgctatcaaaaaatccaaaa |
37567721 |
T |
|
| Q |
109 |
taatagatagaagccaaatcaatcaattcatcaatgaggt |
148 |
Q |
| |
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||||||| |||||||| | |||||||| |||||||| |
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| T |
37567722 |
caatagatgaaagccaaaatgaacaattcattaatgaggt |
37567761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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