View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0376_low_27 (Length: 212)
Name: NF0376_low_27
Description: NF0376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0376_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 2e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 41 - 193
Target Start/End: Original strand, 45565521 - 45565673
Alignment:
| Q |
41 |
cacagatcagcctcgcatcatatttgttttgccgctttacatccaatcgttctcatagtttgtttcacactggggacatccatttgtacatagaactcct |
140 |
Q |
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| T |
45565521 |
cacagatcagcctcgcaccatatttgttttgccgctttacatccaatcgttctcatagtttgtttcacaatggggacatccatttgaacatggaactcct |
45565620 |
T |
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| Q |
141 |
ctctcttgaagtctcataagagtaggaagaatacctccaagcacacttcaaag |
193 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45565621 |
ctcttttgaagtctcataagagtaggaagaatacctccaagcacacttcaaag |
45565673 |
T |
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