View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0376_low_9 (Length: 349)
Name: NF0376_low_9
Description: NF0376
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0376_low_9 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 31281887 - 31282228
Alignment:
| Q |
1 |
aacaacacaaattcgaaattcgaatttgagttcgaatttctaggctctaaaatcgagttattgttgttgttgttatttctgggctctgaccttgagtttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
31281887 |
aacaacacaaattcgaaattcgaatttgaattcgaattcctaggctctaaaatcgagttattgttgttgttgttatttctgggctccgaccttgagtttt |
31281986 |
T |
|
| Q |
101 |
ccggcgcggctgaagcagcttccggcacggtggtctccggtgaaagtacccagatcatgaaacatattgaggggtgtggtagaggtcatcatgaaaaaga |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||| |||||||||||||||||||||||| |
|
|
| T |
31281987 |
ccggcgcggctgcagcagcttccggcacggtggtctccggtgaaagtacccagatcatgaaataaattgagaggtttggtagaggtcatcatgaaaaaga |
31282086 |
T |
|
| Q |
201 |
atattgtcacttttgtttctcaaaaagagtctcatggtggccgaaaattgagagtgaaagtggtgattggagtttttcaaactctcaccaattcaaaaat |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
31282087 |
atattgtcacttttatttctcaaaaagagtctcatggtggccgaaaattgagagtgaaagtggtgattggagtttttcaaactctcaccaatctaaaaat |
31282186 |
T |
|
| Q |
301 |
aaattagtcgttattgaagagggagaagagagaaattcattg |
342 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
31282187 |
aaattagtggttattgaagagggagaagagatgaattcattg |
31282228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 55424828 - 55424483
Alignment:
| Q |
1 |
aacaacacaaattcgaaattcgaatttgagttcgaatttctaggctctaaaatcgagttattgttgttgttgttatttctgggctctgaccttgagtttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||| |
|
|
| T |
55424828 |
aacaacacaaattcgaaattcgaatttgaattcgaatttctaggctctaaaatcgagttattgttgttgtt---atttctgggctccgacctcgagtttt |
55424732 |
T |
|
| Q |
101 |
ccggcgcggctgaagcagcttccggcacggtggtctccggtgaaagtacccagatcatgaaacatattgaggggtgtggtagaggtcatcatgaaaaaga |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||| |||||||||||||||||||||||| |
|
|
| T |
55424731 |
ccggcgcggctgcagcagcttccggcacggtggtctccggtgaaagtacccagatcatgaaataaattgagaggtttggtagaggtcatcatgaaaaaga |
55424632 |
T |
|
| Q |
201 |
atattgtcacttttgtttctcaaaaagagtctcatggtggccgaaaattgagagtgaaagtggtgattggagtttttcaaactctcaccaattcaaaaat |
300 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
55424631 |
atattgtcacttttatttctcaaaaagagtctcatggtggccgaaaattgagagtgaaagtggtgattggagtttttcaaactctcaccaatctaaaaat |
55424532 |
T |
|
| Q |
301 |
aaattagtcgttattgaagagggagaagagagaaattcattggtggttg |
349 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
55424531 |
aaattagtggttattgaagagggagaagagatgaatttgttggtggttg |
55424483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 203 - 347
Target Start/End: Original strand, 37415877 - 37416020
Alignment:
| Q |
203 |
attgtcacttttgtttctcaaaaagagtctcatggtggccgaaaattgagagtgaaagtggtgattggagtttttcaaactctcaccaattcaaaaataa |
302 |
Q |
| |
|
||||||| ||| |||||||||||||||| |||| |||||||||| || |||| ||||||||||||||| || ||||||| |||||||||| |||||||| |
|
|
| T |
37415877 |
attgtcattttcgtttctcaaaaagagtttcatagtggccgaaattt-agagagaaagtggtgattggggtatttcaaattctcaccaatctaaaaataa |
37415975 |
T |
|
| Q |
303 |
attagtcgttattgaagagggagaagagagaaattcattggtggt |
347 |
Q |
| |
|
||| | ||||||||||||| |||||||||||||| | ||||||| |
|
|
| T |
37415976 |
gttaatggttattgaagaggaagaagagagaaatttaatggtggt |
37416020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 28656467 - 28656815
Alignment:
| Q |
1 |
aacaacacaaattcgaaattcgaatttgagttcgaatttctaggctctaaaatcgagttattgttgttgttgttatttctgggctctgaccttgagtttt |
100 |
Q |
| |
|
||||||||||||| ||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28656467 |
aacaacacaaatttgaaattcgaatttgaatttgaatttctaggctctaaaatcaagttattgttgttgttgttatttctgggctctgaccttgagtttt |
28656566 |
T |
|
| Q |
101 |
ccggcgcggctgaagcagcttccggcacggtggtctccggtgaaagtacccagatcatgaaacatattgaggggtgtggtagaggtcatcatgaaaaaga |
200 |
Q |
| |
|
|||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||| | |||||| ||| |||||||||||||||||||||||| |
|
|
| T |
28656567 |
ccggcgcggctgcagcaacttccggcatggtggtctccggtgaaagtacccagatcatgaaataaattgagaggtttggtagaggtcatcatgaaaaaga |
28656666 |
T |
|
| Q |
201 |
atattgtcacttttgtttctcaaaaagagtctcatggtggccgaaaattgagagtgaaagtggtgattggagtttttcaaactctcaccaattcaaaaat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28656667 |
atattgtcacttttgtttctcaaaaagagtctcatggtggccgaaaattgagagtgaaagtggtgattggagtttttcaaactctcaccaatctaaaaat |
28656766 |
T |
|
| Q |
301 |
aaattagtcgttattgaagagggagaagagagaaattcattggtggttg |
349 |
Q |
| |
|
|||||||| |||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
28656767 |
aaattagtggttattgaagagagagaagagatgaattcattggtggttg |
28656815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 203 - 337
Target Start/End: Complemental strand, 7305491 - 7305358
Alignment:
| Q |
203 |
attgtcacttttgtttctcaaaaagagtctcatggtggccgaaaattgagagtgaaagtggtgattggagtttttcaaactctcaccaattcaaaaataa |
302 |
Q |
| |
|
||||||| ||| |||||||||||||||| ||||||||||||||| || |||| |||||||||||||| || ||||||| |||||||||| |||||||| |
|
|
| T |
7305491 |
attgtcattttcgtttctcaaaaagagtttcatggtggccgaaattt-agagacaaagtggtgattggggtatttcaaattctcaccaatctaaaaataa |
7305393 |
T |
|
| Q |
303 |
attagtcgttattgaagagggagaagagagaaatt |
337 |
Q |
| |
|
||| | ||||||||| ||| |||||||||||||| |
|
|
| T |
7305392 |
gttaatggttattgaataggaagaagagagaaatt |
7305358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 234 - 329
Target Start/End: Original strand, 22590013 - 22590108
Alignment:
| Q |
234 |
atggtggccgaaaattgagagtgaaagtggtgattggagtttttcaaactctcaccaattcaaaaataaattagtcgttattgaagagggagaaga |
329 |
Q |
| |
|
|||||||||| ||| | |||| ||| ||||||||| | || |||||||||||||||||| |||||||||||||| ||||||||||||| |||||| |
|
|
| T |
22590013 |
atggtggccggaaagtaagagagaaggtggtgatttgggtatttcaaactctcaccaatctaaaaataaattagtggttattgaagaggaagaaga |
22590108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 203 - 337
Target Start/End: Original strand, 1310103 - 1310236
Alignment:
| Q |
203 |
attgtcacttttgtttctcaaaaagagtctcatggtggccgaaaattgagagtgaaagtggtgattggagtttttcaaactctcaccaattcaaaaataa |
302 |
Q |
| |
|
||||||| ||| |||||||||||||||| ||||||||||||||| || |||| |||||||||||||| || ||||||| |||||||||| |||||||| |
|
|
| T |
1310103 |
attgtcattttcgtttctcaaaaagagtttcatggtggccgaaattt-agagacaaagtggtgattggggtatttcaaattctcaccaatctaaaaataa |
1310201 |
T |
|
| Q |
303 |
attagtcgttattgaagagggagaagagagaaatt |
337 |
Q |
| |
|
||| | |||||| || ||| |||||||||||||| |
|
|
| T |
1310202 |
gttaatggttatttaataggaagaagagagaaatt |
1310236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 234 - 329
Target Start/End: Complemental strand, 30935060 - 30934965
Alignment:
| Q |
234 |
atggtggccgaaaattgagagtgaaagtggtgattggagtttttcaaactctcaccaattcaaaaataaattagtcgttattgaagagggagaaga |
329 |
Q |
| |
|
||||| |||| ||| | |||| ||| ||||||||| | || |||||||||||||||||| |||||||||||||| ||||||||||||| |||||| |
|
|
| T |
30935060 |
atggtagccggaaagtaagagagaaggtggtgatttgggtatttcaaactctcaccaatctaaaaataaattagtggttattgaagaggaagaaga |
30934965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 347
Target Start/End: Original strand, 11796862 - 11796953
Alignment:
| Q |
257 |
aaagtggtgattggagtt-tttcaaactctcaccaattcaaaaataaattagtcgttattgaagagggagaagagagaaattcattggtggt |
347 |
Q |
| |
|
|||||||||||||| | | ||||||| ||||||||||| |||||||| ||| | |||||| || ||| |||||||| ||||| | ||||||| |
|
|
| T |
11796862 |
aaagtggtgattgggggtatttcaaattctcaccaatttaaaaataagttaatggttattaaaaaggaagaagagataaatttaatggtggt |
11796953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1002 times since January 2019
Visitors: 3074