View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0377_high_1 (Length: 509)
Name: NF0377_high_1
Description: NF0377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0377_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 447; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 447; E-Value: 0
Query Start/End: Original strand, 7 - 481
Target Start/End: Original strand, 4039239 - 4039713
Alignment:
| Q |
7 |
atgaatatggactctaaatcaaacaatgtgacacaaacttcaagtggtgatagcaattcagaagatggtgaagatgaagtcaataatgacgtaagtgttg |
106 |
Q |
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||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
4039239 |
atgaatatggaatctaaatcaaacaatgtgacagaaacttcaagtggtgatagcaattcagaagatggtgaagaggaagtcaataatgatgtaagtgttg |
4039338 |
T |
|
| Q |
107 |
atgttcctgattttcggtttctcgacgatattgctccaactagttactactcaccttttgagattgctgaggaaatggaagagcaaatggtggagaatga |
206 |
Q |
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| T |
4039339 |
atgttcctgattttcggtttctcgacgatattgctccaactagttactactcaccttttgagattgctgaggaaatggaagagcaaatggtggagaatga |
4039438 |
T |
|
| Q |
207 |
gagcttttgtgatgatccttcaataattagagctgttatgaagagaatgaaatatgagagaaaattttcagcttctctttatgcattcaatggaatacct |
306 |
Q |
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| T |
4039439 |
gagcttttgtgatgagccttcaatgattagagctgttatgaagagaatgaaatatgagagaaaattttcagcttctctttatgcattcaatggaatacct |
4039538 |
T |
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| Q |
307 |
gaatgcttgaaattgaaacttgaatctggaaacaataatggaagaggaatttctgatcaattgaacaatctcaaagaagcatgtaacaaaaataaacttg |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4039539 |
gaatgcttgaaattgaaacttgaatctggaaacaataatggaagaggaatttctgatcaattgaacaatctcaaagaagcatgtaacaaaaataaacttg |
4039638 |
T |
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| Q |
407 |
agaagaagaagaagatggtggatgagaaaaatgaagaaaataatcaaacttcaactgaaatggaatcttcttgtt |
481 |
Q |
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| T |
4039639 |
agaagaagaagaagatggtggatgagaaaaatgaagaaaataatcaaacttcaactgaaatggagtcttcttgtt |
4039713 |
T |
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Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 243 - 332
Target Start/End: Original strand, 3161283 - 3161372
Alignment:
| Q |
243 |
tatgaagagaatgaaatatgagagaaaattttcagcttctctttatgcattcaatggaatacctgaatgcttgaaattgaaacttgaatc |
332 |
Q |
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|||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||| |
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| T |
3161283 |
tatgaagagaatgaaatatgagaggaaattctcagcttctctttatgctttcaatggaatacctgagtgcttgaagttgaaacttgaatc |
3161372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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