View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0377_high_5 (Length: 266)
Name: NF0377_high_5
Description: NF0377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0377_high_5 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 31 - 266
Target Start/End: Complemental strand, 35749940 - 35749711
Alignment:
| Q |
31 |
caattacactgaactatgttattttcaaatgattagctatgtttcagtgtcggtgtccgtgtcgtatccgttgatatccgtgcctcacattcacttctca |
130 |
Q |
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| T |
35749940 |
caattacactgaataatgttattttcaaatgattagctatgtttcagtgtcggtgtc------gtatccgttggtatccgtgcctcacattcacttctca |
35749847 |
T |
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| Q |
131 |
tagcatgcaacccacatgggttggcccaactatatatgtttgagacattggaatgtgctcctcttatagtctcaattttgaattccggtgccaattttaa |
230 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
35749846 |
tagcatgcaacccacatgggttggcgcaactatatatgtttgagacattggaatgtgctcttcttatagtctcaattttgaattccggtgccaattttaa |
35749747 |
T |
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| Q |
231 |
tgagctatagtttattgctctggctttttaaacggg |
266 |
Q |
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|||||| ||||||||||||||||||||||||||||| |
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| T |
35749746 |
tgagctctagtttattgctctggctttttaaacggg |
35749711 |
T |
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