View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0377_low_10 (Length: 230)
Name: NF0377_low_10
Description: NF0377
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0377_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 119; Significance: 6e-61; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 40280017 - 40279891
Alignment:
| Q |
1 |
ggaaagaaggaacgagatgtgtgatcatgcacccggtgaatggatgaatccagtgataccaaactgcaagagttgtggacaagagaaagcaatgcatcca |
100 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40280017 |
ggaaagaaggaacgagatgtgtgatcgtgcacccgttgaatggatgaatccagtgataccaaactgcaagagttgtggacaagagaaagcaatgcatcca |
40279918 |
T |
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| Q |
101 |
ttgatgacaaagaagagaaatataaat |
127 |
Q |
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| T |
40279917 |
ttgatgacaaagaagagaaatataaat |
40279891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 40458333 - 40458459
Alignment:
| Q |
1 |
ggaaagaaggaacgagatgtgtgatcatgcacccggtgaatggatgaatccagtgataccaaactgcaagagttgtggacaagagaaagcaatgcatcca |
100 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40458333 |
ggaaagaaggaacgagatgtgtgatcgtgcacccgttgaatggatgaatccagtgataccaaactgcaagagttgtggacaagagaaagcaatgcatcca |
40458432 |
T |
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| Q |
101 |
ttgatgacaaagaagagaaatataaat |
127 |
Q |
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| T |
40458433 |
ttgatgacaaagaagagaaatataaat |
40458459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 1 - 120
Target Start/End: Complemental strand, 40284978 - 40284859
Alignment:
| Q |
1 |
ggaaagaaggaacgagatgtgtgatcatgcacccggtgaatggatgaatccagtgataccaaactgcaagagttgtggacaagagaaagcaatgcatcca |
100 |
Q |
| |
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|||||||||||| ||||||||||||| |||||||||||||||||||||||| |||||||| |||||| ||| ||||||| |||||||||||||||||||| |
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| T |
40284978 |
ggaaagaaggaatgagatgtgtgatcgtgcacccggtgaatggatgaatcctgtgataccgaactgcgagacttgtggaaaagagaaagcaatgcatcca |
40284879 |
T |
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| Q |
101 |
ttgatgacaaagaagagaaa |
120 |
Q |
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|||||||||||||||||||| |
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| T |
40284878 |
ttgatgacaaagaagagaaa |
40284859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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